PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00030g03004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 303aa    MW: 33605.9 Da    PI: 9.1048
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00030g03004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding445.2e-14118162347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE+ +++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
  Peinf101Scf00030g03004.1 118 PWTEEEHRIFLLGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 162
                               8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.101.6E-4320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.838111167IPR017930Myb domain
SuperFamilySSF466899.72E-18113168IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-18114166IPR006447Myb domain, plants
SMARTSM007172.6E-11115165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-11115161IPR009057Homeodomain-like
PfamPF002492.0E-11118162IPR001005SANT/Myb domain
CDDcd001678.50E-10118163No hitNo description
Gene3DG3DSA:4.10.60.101.6E-4288295IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRKCSHCGI TGHNSRTCKT QNLTKVDEEA EDARTYNIGL KLFGVKLEIP KSSSSCISMK  60
KSFSVGCLSK ISSSTTGSFV SNINCQMFMD HENMDEVSNG YLSDVLVGRS SDKKKGVPWT  120
EEEHRIFLLG LEKLGKGDWR GISRNFVTTR TPTQVASHAQ KYFLRQNSLN RKKSRRSLFD  180
EVGMDKSTIL LFDKSVTTKT NGTSITNISY EKSPDDETMI SMINFSTSSS KDSMSSTSQH  240
SMPATTLVNF PFINSSNNFT CHNISVQDSA KPDLELTLAV SKPLNNQRRQ PGCFNAENSI  300
AVI
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0108941e-63AP010894.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0017M21, complete sequence.
GenBankHG9755201e-63HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780709.11e-136PREDICTED: myb-like protein H isoform X1
RefseqXP_016450793.11e-136PREDICTED: myb-like protein H isoform X1
SwissprotQ7XC571e-49MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A1S3YFJ31e-134A0A1S3YFJ3_TOBAC; myb-like protein H isoform X1
TrEMBLA0A1U7X1F41e-134A0A1U7X1F4_NICSY; myb-like protein H isoform X1
STRINGXP_009780709.11e-135(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33852147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.19e-47MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]