PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00019g18022.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 405aa    MW: 46607.4 Da    PI: 8.9267
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00019g18022.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.84.9e-075778223
                              EETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                              +C+ Cg sF+ + +Lk+H+++H
  Peinf101Scf00019g18022.1 57 TCEECGVSFKKPAHLKQHMQSH 78
                              6*******************99 PP
2zf-C2H217.71e-0584108123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               ++C+  dC  s++rk++L+rH+  H
  Peinf101Scf00019g18022.1  84 FVCHvdDCQSSYRRKDHLTRHLLQH 108
                               89*******************9887 PP
3zf-C2H213.20.00026113138123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               +kCp   C+ +Fs + n+ +H ++ H
  Peinf101Scf00019g18022.1 113 FKCPvdGCKSTFSFQGNMSQHVKKiH 138
                               89*********************999 PP
4zf-C2H221.46.7e-07163187123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               y+Cp   Cgk+F+  s L++H  +H
  Peinf101Scf00019g18022.1 163 YVCPeaGCGKVFKYASKLRKHEDSH 187
                               9********************9888 PP
5zf-C2H220.31.5e-06283307223
                               EET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                               kC+  dC  +Fs++snL++Hi+  H
  Peinf101Scf00019g18022.1 283 KCEfqDCQHTFSTRSNLVQHIKAvH 307
                               79999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551201133IPR015880Zinc finger, C2H2-like
SMARTSM003550.00335678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.5475683IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.6E-95784IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
SuperFamilySSF576676.5E-1164118No hitNo description
SMARTSM003550.03584108IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.41184113IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-1085110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028086108IPR007087Zinc finger, C2H2
SuperFamilySSF576674.86E-5111139No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5111139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0051113138IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058113138IPR007087Zinc finger, C2H2
PROSITE patternPS000280115138IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-9160189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.45E-5161187No hitNo description
SMARTSM003554.3E-4163187IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97163192IPR007087Zinc finger, C2H2
PROSITE patternPS000280165187IPR007087Zinc finger, C2H2
SMARTSM003559.3224249IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226249IPR007087Zinc finger, C2H2
SMARTSM0035513252273IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.95E-10264320No hitNo description
SMARTSM003550.0013282307IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.547282312IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-6283309IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280284307IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-5310335IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035513313339IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280315339IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGEKKRDIRR YYCEYCGLCR SKKSLISCHI LSHHHQDEIE RPKDEDANVK EGPKMNTCEE  60
CGVSFKKPAH LKQHMQSHSI ERPFVCHVDD CQSSYRRKDH LTRHLLQHQG KLFKCPVDGC  120
KSTFSFQGNM SQHVKKIHDP SVSPKXKIHD PSVSPKVDPP KQYVCPEAGC GKVFKYASKL  180
RKHEDSHGKS NLKILIFLLI CVLKTSNNIK LPCIYAVKLE TVEALCLEPG CMKHFTNEKC  240
LKEHINTCHQ YIVCEICGTK QLKKNIKRHL RTHEEGPTSE RVKCEFQDCQ HTFSTRSNLV  300
QHIKAVHLGD KPFSCGIPGC GIKFAFKHVR DRHEKSGCHV YTPGDFVEAD EQFRSRPRGG  360
RKRKLPVFED IMRKRITPPS GTDRVFNQGS EYLSWLLSVE SDDEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A6e-156018819160PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D6e-156018819160PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355363RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453639.10.0PREDICTED: transcription factor IIIA-like isoform X2
SwissprotQ84MZ41e-135TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1S3YMZ90.0A0A1S3YMZ9_TOBAC; transcription factor IIIA-like isoform X2
STRINGXP_009592258.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-131transcription factor IIIA