PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00017g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | B3 | ||||||||
Protein Properties | Length: 260aa MW: 29298.6 Da PI: 9.5063 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.8 | 2.7e-15 | 18 | 105 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84 ffkv+ ++s+ l++p f+ + +g+k ++ tlt + +W+v++ ++++ +++ kGW eFv+ ++L++gDf vF++ Peinf101Scf00017g00013.1 18 FFKVM--VPGFQSK-LTIPPAFCLKLKGEKSQNGTLT---TGKGTWNVEI--GQTKKDiIWFDKGWDEFVQIHNLRVGDFAVFEH 94 78888..5566665.***********98877765665...56689*****..5555555*************************9 PP -SSSEE..EEEEE CS B3 85 dgrsefelvvkvf 97 ++++f v+++ Peinf101Scf00017g00013.1 95 LDNMNF--SVTLL 105 998999..66665 PP | |||||||
2 | B3 | 49.8 | 6.3e-16 | 173 | 248 | 14 | 88 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.s 88 + +p +f+ ++ + +++t++l+ +sg++ v l+++ ++++ +t+GWk F ++n+Lk+gD+++F+ld++ + Peinf101Scf00017g00013.1 173 PFMHIPMEFCHSNALF--QNTTIRLTGPSGETCPVSLRICSGGKTlyACMTTGWKVFFSSNKLKVGDICIFQLDRTrN 248 4589******999777..6679***************66555555888899*********************997633 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.293 | 15 | 108 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.67E-18 | 16 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.21E-13 | 16 | 106 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-19 | 16 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-11 | 18 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-12 | 18 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-16 | 156 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-16 | 158 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.4E-5 | 159 | 252 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.92E-15 | 159 | 246 | No hit | No description |
PROSITE profile | PS50863 | 9.982 | 160 | 260 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-13 | 173 | 249 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MLSSSSRKED DLPISRRFFK VMVPGFQSKL TIPPAFCLKL KGEKSQNGTL TTGKGTWNVE 60 IGQTKKDIIW FDKGWDEFVQ IHNLRVGDFA VFEHLDNMNF SVTLLDSAGC GKKSLNLEDG 120 EQEVPSQVKK RKSADCSKEK RKPEGDGPHS QYVKGSSEFT ARIKEYNVRK RSPFMHIPME 180 FCHSNALFQN TTIRLTGPSG ETCPVSLRIC SGGKTLYACM TTGWKVFFSS NKLKVGDICI 240 FQLDRTRNDS TSITMDVRVM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619629.1 | 1e-143 | PREDICTED: putative B3 domain-containing protein REM15 | ||||
Refseq | XP_018631640.1 | 1e-143 | PREDICTED: putative B3 domain-containing protein REM15 | ||||
TrEMBL | A0A1S3X5P5 | 1e-142 | A0A1S3X5P5_TOBAC; putative B3 domain-containing protein REM15 isoform X1 | ||||
TrEMBL | A0A1S4D0L2 | 1e-141 | A0A1S4D0L2_TOBAC; B3 domain-containing protein REM8-like | ||||
TrEMBL | A0A1U7VZR1 | 1e-141 | A0A1U7VZR1_NICSY; B3 domain-containing protein REM8-like | ||||
STRING | XP_009619629.1 | 1e-143 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8536 | 16 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 1e-21 | B3 family protein |