PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00015g11002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 231aa MW: 26340.7 Da PI: 4.632 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32.1 | 1.4e-10 | 12 | 38 | 15 | 41 |
HHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifs 41 + + + KKA+ELS+LCd++va++if Peinf101Scf00015g11002.1 12 RKIQSLYKKAQELSTLCDVKVAIVIFK 38 4557899******************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.451 | 1 | 39 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-10 | 8 | 39 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.84E-13 | 8 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 6.677 | 80 | 167 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MDIVSERALF ARKIQSLYKK AQELSTLCDV KVAIVIFKNG ENTPILWPSQ AVAEEIARTF 60 RNTDEFQKMK KLVKLENYLL EKLQDRAENI RKKNEEMEME VLFNHLVVGK NINELDVRQL 120 KGLKKLFEVK RAKVAERKKQ LNEEKQLNED NEKNEDVQPI QDQPDQPQPP PAADKNVSEA 180 STSSLELLKN NQLFLEAMAA NQDFGLGVES GTSSGPQEAV KDNDAEEEND D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ168509 | 0.0 | FJ168509.1 Petunia x hybrida type I MADS box transcription factor (MADSy4) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B6DT60 | 1e-142 | B6DT60_PETHY; Type I MADS box transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27810.1 | 2e-13 | M-type_MADS family protein |