PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00011g01019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 36152.7 Da PI: 9.6631 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.4 | 1.9e-55 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL kkv + ++++ ++i+e+d++k+ePw+Lp+k+k +ekewyfF rd+ky+tg r+nrat++gyWka Peinf101Scf00011g01019.1 14 LPPGFRFHPTDEELITYYLLKKVLDATFTA-RAIAEIDLNKCEPWQLPEKAKIGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKA 97 79*************************999.89***************99999******************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd+e++s+ k +lvg+kktLvfy+grapkgek++W+mheyrl Peinf101Scf00011g01019.1 98 TGKDREIYSSkKCALVGMKKTLVFYRGRAPKGEKSNWIMHEYRL 141 ********9845567***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-62 | 11 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.513 | 14 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-28 | 15 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MESYHPFECS DAHLPPGFRF HPTDEELITY YLLKKVLDAT FTARAIAEID LNKCEPWQLP 60 EKAKIGEKEW YFFNLRDRKY PTGLRTNRAT EAGYWKATGK DREIYSSKKC ALVGMKKTLV 120 FYRGRAPKGE KSNWIMHEYR LDGKLAYHYI SRSSKDDWVI SRVFRKTASA DSTTTSKRSL 180 SSHINRYPEV KSPSSSVSLP LLLDSSSAAE DQDSFSKDFN YNNSKQHVSC FSNTATNFNT 240 TRSLFEFSAT TPPHITLPSP SSNFIGSKIA DPIGVSSFPN IRSLQENLQF PDLFFVGLTP 300 PPSTHGGSDR KAKPKVKES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-54 | 14 | 170 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-54 | 14 | 170 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-54 | 14 | 170 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-54 | 14 | 170 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-54 | 14 | 170 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-54 | 14 | 170 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-54 | 14 | 170 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-54 | 14 | 170 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-54 | 14 | 170 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-54 | 14 | 170 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-54 | 14 | 170 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-54 | 14 | 170 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 1e-54 | 14 | 170 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-54 | 14 | 170 | 17 | 169 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016509208.1 | 1e-134 | PREDICTED: protein CUP-SHAPED COTYLEDON 2-like | ||||
Swissprot | O04017 | 1e-103 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | A0A1S4D790 | 1e-132 | A0A1S4D790_TOBAC; protein CUP-SHAPED COTYLEDON 2-like | ||||
STRING | XP_009615029.1 | 1e-133 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 1e-100 | NAC family protein |