PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Ctg13518254g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | TCP | ||||||||
Protein Properties | Length: 186aa MW: 21532.1 Da PI: 8.455 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.3 | 6.8e-35 | 114 | 177 | 2 | 65 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65 +gkkdrhski+T++g RdRRvRls+++a++fFdLqd LGfdk+sktieWL+ ++ aikel ++ Peinf101Ctg13518254g00001.1 114 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDILGFDKASKTIEWLFSKSYDAIKELSEN 177 79**********************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.7E-35 | 114 | 178 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.883 | 116 | 174 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MFPQSNNDEP FLYTSKTFLE RSFTYDHHNP SSSSRHEDYP FLLNFPSPYL DNHELPLSQI 60 LPQQHQELEV IHHGMEAYPS KAHISGDTSA VEMSGEAKTS SKKRNLGATP RRRTGKKDRH 120 SKICTAQGVR DRRVRLSLHI ARKFFDLQDI LGFDKASKTI EWLFSKSYDA IKELSENMPQ 180 KGYFDE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF274249 | 0.0 | JF274249.1 Petunia x hybrida TCP1 gene, complete cds. | |||
GenBank | KR002103 | 0.0 | KR002103.1 Petunia x hybrida TCP transcription factor 1 (TCP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006366063.1 | 1e-91 | PREDICTED: transcription factor TCP12 | ||||
TrEMBL | G0ZGI6 | 1e-132 | G0ZGI6_PETHY; Putative transcription factor | ||||
STRING | PGSC0003DMT400019324 | 4e-91 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2436 | 23 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-31 | TCP domain protein 12 |