PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Ctg13358032g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 212aa MW: 25280.7 Da PI: 7.1516 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.4 | 1.4e-07 | 6 | 47 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e + ++++G++ Wk a ++g + + ++k+ w+ + Peinf101Ctg13358032g00001.1 6 KWTEEEYEMVRKFHREHGPK-WKVLADELG--KHRFHVKDTWRRL 47 8*****************99.********9..6788899988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.566 | 1 | 52 | IPR017930 | Myb domain |
SMART | SM00717 | 0.55 | 3 | 50 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.21E-9 | 5 | 65 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.7E-8 | 6 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.1E-10 | 7 | 65 | No hit | No description |
PROSITE profile | PS50090 | 7.933 | 49 | 117 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 6.61E-6 | 52 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.021 | 53 | 119 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00816 | 57 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-9 | 60 | 117 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.66E-6 | 97 | 172 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.131 | 119 | 172 | IPR017877 | Myb-like domain |
SMART | SM00717 | 89 | 123 | 174 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
RCETRKWTEE EYEMVRKFHR EHGPKWKVLA DELGKHRFHV KDTWRRLKLS NQKKGQWTQE 60 EYQTLFDLVN TDLRLKLSED KKSKYGMLRD NIPWSAISDK LSTRTAPSCC LKWYDQLTSP 120 MVAKGEWADA DDYHLIDALF VLDASCVEDV DWDNLLDHRP GEICRKRWNQ MVLHIDQCGN 180 RSFAEQIEVL AKRYRPDLAE VRETWDSKPI VP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019230671.1 | 1e-135 | PREDICTED: transcription termination factor 1-like | ||||
TrEMBL | A0A314KJ03 | 1e-134 | A0A314KJ03_NICAT; Uncharacterized protein | ||||
STRING | XP_009760244.1 | 1e-135 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1029 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-91 | MYB_related family protein |