PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Ctg12847943g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | NF-YA | ||||||||
Protein Properties | Length: 109aa MW: 11678.5 Da PI: 10.0388 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 37.8 | 6.2e-12 | 1 | 22 | 37 | 58 |
CBFB_NFYA 37 pylheSRhkhAlrRpRgsgGrF 58 pylheSRh+hAl+R+R+sgGrF Peinf101Ctg12847943g00002.1 1 PYLHESRHQHALKRARASGGRF 22 8********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51152 | 17.68 | 1 | 25 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.5E-9 | 1 | 22 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
PYLHESRHQH ALKRARASGG RFARKSDADT SKGTSSGSAV SSQSRCSSGS EPLPSSTADV 60 PEKHNDGSLT ERQHSYSNGN GYGKKNSFHE SKYQPQSTHF GEGGSAIKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006366543.1 | 8e-48 | PREDICTED: nuclear transcription factor Y subunit A-1-like | ||||
TrEMBL | M1AQ62 | 2e-46 | M1AQ62_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400027785 | 3e-47 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3111 | 22 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.3 | 9e-11 | nuclear factor Y, subunit A1 |