PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01276401G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bZIP | ||||||||
Protein Properties | Length: 83aa MW: 9253.15 Da PI: 10.8181 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45.3 | 1.9e-14 | 24 | 79 | 5 | 60 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 ++ +r+ +NRe+ArrsR+RK++++eeL +++ L+aeN + ++ + e k++ PH01276401G0010 24 RKRKRMLSNRESARRSRARKQQRLEELIAEAARLQAENARAEAQIGAYARELGKVD 79 678999********************************988877777777666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.4E-14 | 20 | 83 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.2E-14 | 21 | 77 | No hit | No description |
PROSITE profile | PS50217 | 11.323 | 22 | 83 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.5E-10 | 24 | 72 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.31E-11 | 24 | 76 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 27 | 42 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MSSRRSTSPE SGNTDGSGYT ADERKRKRML SNRESARRSR ARKQQRLEEL IAEAARLQAE 60 NARAEAQIGA YARELGKVDG ENA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 36 | 43 | RRSRARKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01276401G0010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096162 | 1e-137 | FP096162.1 Phyllostachys edulis cDNA clone: bphylf050n09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654003.1 | 8e-29 | PREDICTED: ocs element-binding factor 1-like | ||||
Swissprot | P24068 | 3e-15 | OCS1_MAIZE; Ocs element-binding factor 1 | ||||
TrEMBL | J3M3N5 | 2e-27 | J3M3N5_ORYBR; Uncharacterized protein | ||||
STRING | OB05G12090.1 | 3e-28 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1886 | 35 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62420.1 | 4e-08 | basic region/leucine zipper motif 53 |
Publications ? help Back to Top | |||
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