PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01190367G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GRAS | ||||||||
Protein Properties | Length: 158aa MW: 17095.7 Da PI: 7.559 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 190.3 | 1.3e-58 | 6 | 158 | 1 | 160 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPil 91 lv++Ll+cAeav++++l++a+a+++++ la+++g +m+++aayf eALa+r++r ++p+++s + ++++a+ l f+e +P+l PH01190367G0010 6 LVHALLACAEAVQQENLTAAEAVVKQIPLLAASQGGAMRKVAAYFGEALARRVYR--------FRPTPDS--SLLDAAFADLLhahFYESCPYL 89 689****************************************************........4444444..34444444444446******** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160 kf+h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l++ PH01190367G0010 90 KFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQ 158 *************************************************************99999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.451 | 1 | 158 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.5E-56 | 6 | 158 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
EAGIRLVHAL LACAEAVQQE NLTAAEAVVK QIPLLAASQG GAMRKVAAYF GEALARRVYR 60 FRPTPDSSLL DAAFADLLHA HFYESCPYLK FAHFTANQAI LEAFAGCRRV HVVDFGIKQG 120 MQWPALLQAL ALRPGGPPSF RLTGVGPPQP DETDALQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-28 | 1 | 146 | 14 | 166 | Protein SCARECROW |
5b3h_A | 1e-28 | 1 | 146 | 13 | 165 | Protein SCARECROW |
5b3h_D | 1e-28 | 1 | 146 | 13 | 165 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. Acts as a negative regulator of GAMYB gene expression. {ECO:0000269|PubMed:12011349, ECO:0000269|PubMed:12011350, ECO:0000269|PubMed:12468736}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01190367G0010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR668587 | 0.0 | FR668587.1 Triticum aestivum rht-B1 gene, allele h. | |||
GenBank | JF930279 | 0.0 | JF930279.1 Triticum aestivum DELLA protein (Rht-B1) gene, Rht-B1c allele, complete cds. | |||
GenBank | JX993610 | 0.0 | JX993610.1 Triticum aestivum cultivar Kanred bio-material JIC:741 haplotype Rht-B1a_5 DELLA protein (Rht-B1) gene, complete cds. | |||
GenBank | JX993611 | 0.0 | JX993611.1 Triticum aestivum cultivar Arawa bio-material INRA:00957 haplotype Rht-B1a_6 DELLA protein (Rht-B1) gene, complete cds. | |||
GenBank | JX993617 | 0.0 | JX993617.1 Triticum aestivum cultivar SS7010073 bio-material JIC:7010073 haplotype Rht-B1a_12 DELLA protein (Rht-B1) gene, complete cds. | |||
GenBank | JX993618 | 0.0 | JX993618.1 Triticum dicoccoides cultivar 65 bio-material USDA:PI428097 haplotype Rht-B1a_13 DELLA protein (Rht-B1) gene, complete cds. | |||
GenBank | JX993619 | 0.0 | JX993619.1 Triticum dicoccoides cultivar 57 bio-material USDA:PI428054 haplotype Rht-B1a_14 DELLA protein (Rht-B1) gene, complete cds. | |||
GenBank | KC434134 | 0.0 | KC434134.1 Triticum aestivum cultivar Maringa DELLA (Rht-B1) gene, Rht-B1c allele, complete cds. | |||
GenBank | KC434135 | 0.0 | KC434135.1 Triticum aestivum cultivar Maringa DELLA (Rht-B1) mRNA, Rht-B1c allele, complete cds. | |||
GenBank | KC614607 | 0.0 | KC614607.1 Triticum aestivum cultivar Auguste bio-material INRA:13861 haplotype Rht-B1a_6 DELLA protein (Rht-B1) gene, complete cds. | |||
GenBank | KC614608 | 0.0 | KC614608.1 Triticum aestivum cultivar Cappelle Desprez bio-material NIAB EW3 haplotype Rht-B1a_6 DELLA protein (Rht-B1) gene, complete cds. | |||
GenBank | KC614609 | 0.0 | KC614609.1 Triticum aestivum cultivar Hobbit 'Sib' bio-material NIAB EW7 haplotype Rht-B1a_6 DELLA protein (Rht-B1) gene, complete cds. | |||
GenBank | KC767926 | 0.0 | KC767926.1 Triticum aestivum cultivar Sumai 3 DELLA (Rht-B1) gene, Rht-B1c allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147810.1 | 1e-105 | DELLA protein RHT-1 | ||||
Swissprot | Q8W127 | 1e-106 | SLN1_HORVU; DELLA protein SLN1 | ||||
Swissprot | Q9ST59 | 1e-106 | RHT1_WHEAT; DELLA protein RHT-1 | ||||
TrEMBL | C0LG58 | 1e-106 | C0LG58_ZEALU; Gibberelin response modulator dwarf 8 (Fragment) | ||||
TrEMBL | Q6R4G7 | 1e-107 | Q6R4G7_ZEAMP; Gibberelin response modulator dwarf 8 (Fragment) | ||||
STRING | MLOC_67940.1 | 1e-106 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP998 | 38 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 7e-73 | GRAS family protein |
Publications ? help Back to Top | |||
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