PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01107020G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | Trihelix | ||||||||
Protein Properties | Length: 207aa MW: 21062.5 Da PI: 10.6237 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 53.2 | 7.9e-17 | 109 | 151 | 24 | 66 |
trihelix 24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 + k+p Wee+s+ m++ g++rs+k+Ckekwen+nk++kk PH01107020G0010 109 AGPKGPFWEEISAGMQRLGYNRSAKRCKEKWENINKYFKKNGG 151 4578999********************************9755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 1.16E-18 | 108 | 148 | No hit | No description |
Pfam | PF13837 | 3.6E-11 | 111 | 154 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MAASRDTAVV SFIQKITGQT IPMPSIAAPA ITVMPPSSQP HPTPIASAAP APPPSSQPPA 60 SHSQTPPQPQ PSPQPQQKSQ MPATPQPPQA PPPQQQQQSS MDIIMTPEAG PKGPFWEEIS 120 AGMQRLGYNR SAKRCKEKWE NINKYFKKNG GTSNNAGNGG RSVGGASEGG GGSGGMQIQS 180 TNGSVAVGRF FGEGGGGGGG GGTAAKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01107020G0010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061205 | 7e-37 | BT061205.1 Zea mays full-length cDNA clone ZM_BFb0123A12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191229.1 | 1e-42 | trihelix transcription factor GTL1-like isoform X1 | ||||
Refseq | XP_020191230.1 | 9e-43 | trihelix transcription factor GTL1-like isoform X2 | ||||
TrEMBL | M8A4E9 | 2e-43 | M8A4E9_TRIUA; Trihelix transcription factor GT-2 | ||||
STRING | Traes_5BL_590637F31.1 | 3e-45 | (Triticum aestivum) | ||||
STRING | TRIUR3_33328-P1 | 3e-44 | (Triticum urartu) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 4e-21 | Trihelix family protein |