PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01093283G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | G2-like | ||||||||
Protein Properties | Length: 181aa MW: 19935.7 Da PI: 11.3987 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 38.6 | 2.4e-12 | 121 | 149 | 2 | 30 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPk 30 pr+rWt++LH+rFv+ave LGG+e+ P PH01093283G0010 121 PRMRWTSTLHTRFVRAVELLGGHERESPE 149 9************************9986 PP | |||||||
2 | G2-like | 52.6 | 1e-16 | 149 | 181 | 19 | 51 |
G2-like 19 eqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 e LGG+e+AtPk++le+m+vk+Ltl+hvkSHLQ PH01093283G0010 149 ELLGGHERATPKSVLEMMDVKDLTLAHVKSHLQ 181 57******************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.2E-11 | 118 | 181 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 119 | 181 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-5 | 122 | 181 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 7.2E-11 | 149 | 181 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
RGIPVYSRPA AGHPFLGGGD HHHHHHPKAG LYNPYHSTAW PTSLRSTSTA TAAAPSVDPT 60 AAFLSPSAYH RMLSRTGRLH DTLRGYGTGM GTRVLGWQSF GLASSHFMPK LPASRRSMRA 120 PRMRWTSTLH TRFVRAVELL GGHERESPEL LGGHERATPK SVLEMMDVKD LTLAHVKSHL 180 Q |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01093283G0010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004463 | 4e-38 | AP004463.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0456B03. | |||
GenBank | AP005734 | 4e-38 | AP005734.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0032E15. | |||
GenBank | AP014964 | 4e-38 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 4e-38 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973472.1 | 9e-62 | probable transcription factor RL9 | ||||
Swissprot | Q0J235 | 3e-38 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A3L6RKZ8 | 3e-62 | A0A3L6RKZ8_PANMI; Putative transcription factor RL9 | ||||
STRING | Pavir.Fb00812.1.p | 5e-62 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2558 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 1e-20 | G2-like family protein |