PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01026494G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 180aa MW: 18768.2 Da PI: 7.9038 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.2e-20 | 46 | 94 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +grW+AeIrdp++ +r++lg++ taeeAa+a++aa++ ++g PH01026494G0010 46 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATAEEAARAYDAAARDIRG 94 9*******.**********954...4***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.75 | 45 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-22 | 45 | 103 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-33 | 45 | 108 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-31 | 45 | 102 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.6E-14 | 45 | 94 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.55E-18 | 46 | 104 | No hit | No description |
PRINTS | PR00367 | 2.6E-11 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MCGGAIIAGC VPASERRPAT DTSASSLTGE ELTTVKLPPP GRKTAYRGIR RRPWGRWAAE 60 IRDPRKGARV WLGTYATAEE AARAYDAAAR DIRGAKAKLN FPPAVGALPA ATGAAANKRR 120 RVAAEESSGS SCLPAAAGGG GAERLRECMS GLEAFLGLED VAEEGDDMEP WDAVNLMLE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-21 | 46 | 102 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 121 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01026494G0010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956072 | 2e-67 | EU956072.1 Zea mays clone 1556883 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148477.1 | 2e-68 | ethylene-responsive transcription factor RAP2-3-like | ||||
TrEMBL | F8SLT7 | 2e-76 | F8SLT7_HORVV; AP2/EREBP-like protein | ||||
STRING | MLOC_64636.1 | 4e-77 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 6e-23 | ERF family protein |