PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01021666G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 224aa MW: 23684.2 Da PI: 6.775 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85 | 7e-27 | 21 | 82 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g+++pr+Y+rCt++ +C + k+v+r++ dp +++++Y+g+H++ PH01021666G0010 21 LDDGFSWRKYGQKDILGAKYPRAYFRCTHRhtqNCYASKQVQRTDGDPLLFDVVYHGNHTCA 82 59***************************9999***************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.1E-28 | 8 | 83 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.12E-25 | 14 | 83 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.61 | 16 | 79 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.8E-39 | 21 | 83 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-25 | 22 | 81 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence Send to blast |
KTLPKWSTQV RVSTVQDVGP LDDGFSWRKY GQKDILGAKY PRAYFRCTHR HTQNCYASKQ 60 VQRTDGDPLL FDVVYHGNHT CAQSPRSNSQ WPRPAASAEH PHPQPGQEQS STTSVGFKAE 120 GGAQGLEPVL PQFSFPSTQA GANTGGAASS GVPSCVVTAP SFVSPAKSEC QVSGSGYAAG 180 GGSLAGVRNV ADVELTSTTN SPMGDMDFML QLDADFLDNP GYL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-21 | 18 | 81 | 5 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01021666G0010 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KR827401 | 4e-97 | KR827401.1 Triticum aestivum WRKY50 transcriptional factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182144.1 | 3e-87 | probable WRKY transcription factor 53 | ||||
TrEMBL | F2CXI6 | 4e-94 | F2CXI6_HORVV; Predicted protein (Fragment) | ||||
TrEMBL | M0W799 | 3e-94 | M0W799_HORVV; Uncharacterized protein | ||||
STRING | MLOC_44455.1 | 5e-95 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3355 | 31 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23810.1 | 5e-38 | WRKY family protein |