PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01008287G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 642aa    MW: 70112 Da    PI: 5.608
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01008287G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.42.6e-3087171187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+++e+laLi++r+em+ ++r++ l++p Weevs+k++e g++rs+k+Ckek+en+ k+yk++keg+ +r++++s  +++f++lea
  PH01008287G0010  87 RWPREETLALIRIRSEMDAAFRNAGLRAPVWEEVSRKLAELGYHRSAKKCKEKFENVDKYYKRTKEGRAGRQDGKS--YRFFSELEA 171
                      8*********************************************************************866665..******985 PP
2trihelix106.22.2e-33392477187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k+ev+aLi++r e++e++++   k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e s+tcpyf+ql+a
  PH01008287G0010 392 RWPKEEVQALIQLRMEKDEQYKDMGPKGPLWEDISAGMRRIGYSRSAKRCKEKWENINKYFKKVKESNKRR-PEGSKTCPYFHQLDA 477
                      8********************************************************************97.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.006284146IPR001005SANT/Myb domain
PfamPF138371.1E-2286172No hitNo description
PROSITE profilePS500907.0586144IPR017877Myb-like domain
CDDcd122031.91E-2786151No hitNo description
SMARTSM007173.9E-5389451IPR001005SANT/Myb domain
PfamPF138372.4E-21391478No hitNo description
PROSITE profilePS500907.642391449IPR017877Myb-like domain
CDDcd122035.59E-25391456No hitNo description
Gene3DG3DSA:1.10.10.604.0E-4391448IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MQHHQHGAGS PYRAPTTDMV PFLPPPASGP VSVSSMPPPM QPQPPAGTSL EELPADCSAA  60
VNFHYDDMLV DVGCGGSVSE AGGPSNRWPR EETLALIRIR SEMDAAFRNA GLRAPVWEEV  120
SRKLAELGYH RSAKKCKEKF ENVDKYYKRT KEGRAGRQDG KSYRFFSELE ALHAAAPQQH  180
QATAMATAAY TATTKDPQPL VMARMAPAVL AHRGASLPDL SFSSNSESES DDESDDEEEE  240
GLGKLTSADG GSNKRMMALF EGMMKQVTEK QDAMQRLFLE TLDKWEAERT AREETWRRKE  300
VARINREREE LAKERTAAAS RDAALIAFLQ RVGGQSVQLP PSSTVAIPKP MPAHTPPLPH  360
HDAAAASLQL VPVQAKVEEG WAGGESSGGT SRWPKEEVQA LIQLRMEKDE QYKDMGPKGP  420
LWEDISAGMR RIGYSRSAKR CKEKWENINK YFKKVKESNK RRPEGSKTCP YFHQLDAIYR  480
KKHFTGSGGG SSAASGASMA AVTASEQENP QRELEGKSSN DFDKRNISGG ENVQAPLGTG  540
QTATATTMLD DSATNKKAED IVTTKPKMQS QQQELDETDS DDMEGNYSDE GDDDGNEDDK  600
MQYKIEFQKP KESGSGSAPT PATTAAVTSS APTSSTFLAV Q*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01008287G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3754941e-110AK375494.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3095N08.
GenBankAK3761291e-110AK376129.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3115F22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184216.10.0trihelix transcription factor GTL1-like
RefseqXP_020184217.10.0trihelix transcription factor GTL1-like
SwissprotQ391171e-112TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A287UDK90.0A0A287UDK9_HORVV; Uncharacterized protein
STRINGSi016578m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-55Trihelix family protein