PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01007263G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 358aa    MW: 40433.4 Da    PI: 7.5829
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01007263G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013162184223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ C+++++++ +L  Hi+  H
  PH01007263G0020 162 SCSVCSRVYPTSRLLSIHISEaH 184
                      6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003554.7134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
SMARTSM003555161184IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280163184IPR007087Zinc finger, C2H2
SMARTSM003550.38199224IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280201224IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MQQKPDEAME VCARGEEEAE APKAVGAGSG PGLGFWAAAR RRLAPDDPFF AAGDMERELL  60
AKHWPVGRDE SQLNPTLAED WCLIRDRMNN QPTTASCFPA GIMLGDVSRV VALDLSEDDR  120
YQLEKMEVAS ANTLFCPIAG CGAHLDCLEN FEEHYSTRHT ASCSVCSRVY PTSRLLSIHI  180
SEAHDSFFQA KVAHGFPMYE CLVEGCGVKL KSYKSRQQHL VDKHQFPKSF EFFKRAHPSQ  240
RQRQKCHRKQ TAYMGENKRD TLMDVDGKSP RQTNWSYRPK QHHHKESKEN EHHSKEAKEN  300
EMEVEQKIDE LTSAVSKLST ADSTPSSITF GHRRSRGLTF VPRSIRQNKQ VSQPEAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01007263G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577552.10.0zinc finger protein 511
TrEMBLI1ILN30.0I1ILN3_BRADI; Uncharacterized protein
STRINGBRADI4G18830.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.14e-80zinc ion binding;nucleic acid binding;zinc ion binding