PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01006200G0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | C2H2 | ||||||||
Protein Properties | Length: 146aa MW: 15984.3 Da PI: 8.7034 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k+F++ L H r+H PH01006200G0010 6 HKCFICHKVFPTGQALGGHKRKH 28 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.89E-6 | 3 | 31 | No hit | No description |
Pfam | PF13912 | 1.2E-11 | 5 | 30 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.621 | 6 | 33 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MTNRVHKCFI CHKVFPTGQA LGGHKRKHYD KGVGGAASST ELLAAASAAE SEVGSSNNGN 60 SATWAFDLNL SAVPKFVWWP CAKGKNMWED KEVQSPLTFS PCEHLHGSDP SKVFGLVMKL 120 KSNTIRSFVR CRYCLICSWS FIESE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01006200G0010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093907 | 1e-139 | FP093907.1 Phyllostachys edulis cDNA clone: bphylf045a24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633313.1 | 3e-41 | zinc finger protein 1 | ||||
Swissprot | Q42430 | 1e-41 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A0E0D792 | 5e-43 | A0A0E0D792_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G31660.1 | 8e-44 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19580.2 | 4e-11 | zinc-finger protein 2 |