PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01006106G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 149aa    MW: 16707.8 Da    PI: 7.5161
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01006106G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.12.6e-152686363
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                     + +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ ++aeN +   +++ +  ++ ++++e+
  PH01006106G0050 26 DHRREKRRLSNRESARRSRLRKQQHLDELVQEVARFKAENARVLARANDIAGQYVRVEQEN 86
                     568***************************************9999999998888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.0E-182488IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.8E-112574No hitNo description
PROSITE profilePS5021710.8182689IPR004827Basic-leucine zipper domain
PfamPF001709.2E-122786IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.46E-102882No hitNo description
CDDcd147021.71E-152979No hitNo description
PROSITE patternPS0003603146IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006971Biological Processhypotonic response
GO:0009267Biological Processcellular response to starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MSSSSLSPAG RLSGSDGDSA DIMTADHRRE KRRLSNRESA RRSRLRKQQH LDELVQEVAR  60
FKAENARVLA RANDIAGQYV RVEQENTVLR ARAAELGDRL RSVNEVLRVV EEFSGIAMDI  120
QEECPPDDPL LRPWQIPCPA TAAHMLQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14046RRSRLRK
24047RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtMay contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00419DAPTransfer from AT3G62420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01006106G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0948000.0FP094800.1 Phyllostachys edulis cDNA clone: bphylf041c24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579247.14e-87ocs element-binding factor 1
SwissprotP240681e-79OCS1_MAIZE; Ocs element-binding factor 1
TrEMBLI1IHI89e-86I1IHI8_BRADI; Uncharacterized protein
STRINGBRADI4G04720.11e-86(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188635100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.11e-36basic region/leucine zipper motif 53
Publications ? help Back to Top
  1. Singh K, et al.
    OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development.
    Plant Cell, 1990. 2(9): p. 891-903
    [PMID:2152133]