PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01005966G0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | C2H2 | ||||||||
Protein Properties | Length: 199aa MW: 20991.6 Da PI: 8.6896 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k F + L H ++H PH01005966G0040 61 FRCSVCEKAFASYQALGGHKSSH 83 89**********99999999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.9E-12 | 60 | 85 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.44E-8 | 61 | 83 | No hit | No description |
SMART | SM00355 | 0.068 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.93 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.44E-8 | 113 | 140 | No hit | No description |
SMART | SM00355 | 0.44 | 118 | 140 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.8E-11 | 118 | 141 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.39 | 118 | 145 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 120 | 140 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MTAALDPIVL SLSLAVPALR KEDYLAICLA ALAGTDRGGP QGEEGAGKWC SRPVPPQELR 60 FRCSVCEKAF ASYQALGGHK SSHRKAPTGE QQLYAAAAQA SAGDSKEMAS SGGSNGPHRC 120 TICRRSFATG QALGGHKRCH YWDGTSVSVS MSASASGSSS VRNFDLNLMP VPENTGVKRW 180 AEEEEVQSPL PAKKLRGSN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01005966G0040 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094070 | 0.0 | FP094070.1 Phyllostachys edulis cDNA clone: bphyem106f16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650238.1 | 2e-78 | PREDICTED: zinc finger protein 1-like | ||||
Swissprot | Q75KE5 | 1e-76 | ZFP36_ORYSJ; Zinc finger protein 36 | ||||
TrEMBL | J3LQ52 | 4e-77 | J3LQ52_ORYBR; Uncharacterized protein | ||||
STRING | OB03G31780.1 | 7e-78 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3412 | 32 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 3e-32 | salt tolerance zinc finger |
Publications ? help Back to Top | |||
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