PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01005720G0030

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 221aa MW: 24500.8 Da PI: 6.2257

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01005720G0030	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.1	2.6e-10	70	119	1	50
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 e+el++ r+ NReA r++R++Kka ++ Lee++k+L a N++L +l+ PH01005720G0030 70 EEELRKPRKPLGNREAVRKYREKKKAHTAFLEEEIKKLRATNQQLVRRLQ 119 78999****************************************98887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-14	70	138	No hit	No description
SMART	SM00338	3.1E-11	70	137	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.806	72	119	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.44E-8	73	120	No hit	No description
Pfam	PF07716	4.6E-12	74	127	IPR004827	Basic-leucine zipper domain
CDD	cd14686	1.85E-11	77	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MDDGLDLPIP SHLLFSHPEI SHGFDEFLKN TTTCTHTHTC NPPGPTVAMH THTCLHTHTQ 60 AIASGENNVE EELRKPRKPL GNREAVRKYR EKKKAHTAFL EEEIKKLRAT NQQLVRRLQG 120 HAALEAEVVR LRSILFDVRG KIDPEIGSFP FQKLCSVGSV ICTDHTLFFN TNTEVAVREE 180 ISIPTVVDCG IDESGIISQE LDIPEMANSM DAVASFVNPA *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01005720G0030

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618027.1	1e-123	basic leucine zipper 23
Refseq	XP_015618034.1	1e-123	basic leucine zipper 23
Swissprot	Q8GTS2	6e-50	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A0P0V9D3	1e-122	A0A0P0V9D3_ORYSJ; Os01g0801901 protein
STRING	OS01T0801901-00	1e-123	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3831	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	3e-40	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]