PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005573G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GeBP
Protein Properties Length: 286aa    MW: 30482.3 Da    PI: 10.5489
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005573G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573514e-1690178397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      +q+lws+ De++lL G   f+a+tg  p   d+ a+++ +++s+s +  +  +  K++rLK Kf +           + + +hd+ + +l++ +
  PH01005573G0030  90 VQKLWSDADEVALLTGAAAFRARTGHAPRLtDMGALFDSIRGSLSPHLDQAKVYYKLKRLKSKFLHATPA-------AAAGPHDRLVRDLCNNV 176
                      79************************98877**********************************99988.......77889999999999999 PP

           DUF573  96 Wg 97 
                      Wg
  PH01005573G0030 177 WG 178
                      98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-1591178IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MPSKRPSPSA MDAGAAASSP SPPRSKKRSS RPNPRMDDDR PEPNPSSRGS PAGASSRKSE  60
RKRRPRAFTD SAAVTAPAAA AHAGGAHGAV QKLWSDADEV ALLTGAAAFR ARTGHAPRLT  120
DMGALFDSIR GSLSPHLDQA KVYYKLKRLK SKFLHATPAA AAGPHDRLVR DLCNNVWGAH  180
LVPPAEDDAA ADEGDANERR SVPDTAAMLP VVTEVLDGYW KRNGRALSGV SLEKGLSLLG  240
TEDARSVEAK WRRQLDAEVR TQMRRHDLAK EVYGLLIDAI KGLGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15964ERKRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01005573G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236068.11e-114STOREKEEPER protein
TrEMBLA0A0Q3INF31e-113A0A0Q3INF3_BRADI; Uncharacterized protein
STRINGBRADI3G57800.11e-112(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01370.19e-11DNA-binding storekeeper protein-related transcriptional regulator