PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004504G0130
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ZF-HD
Protein Properties Length: 362aa    MW: 37181.1 Da    PI: 7.5014
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004504G0130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.94.3e-3259113358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      ++rY+eClkNhA+ +GghavDGCgEfm++ geeg+++al+CaACgCHRnFHR+e++
  PH01004504G0130  59 GARYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGSIDALRCAACGCHRNFHRKESD 113
                      579*************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.8E-2960112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-2961111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.96362111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2264113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDFDEHDEGD GDEEMAPMPV SSSYEAPPQP GLGGGGGPKP GDSGGRIRTP GGGGGGAGGA  60
RYRECLKNHA VGIGGHAVDG CGEFMAAGEE GSIDALRCAA CGCHRNFHRK ESDSPTGAGA  120
AEPAAVSPAA ITAYGAAPHH QFSPYYRTPA GYLHQQQHQM AAAAAGHTQR LLALPSTSHS  180
GRDEGDDMSG MVGPMVMGPM VGMSLGSARP PAPVPARSAS APSSRRNRRT RCWPSRSGSG  240
GASRSTTRPP CSSSARRCDD DDVGVVGKEE GMAICRFGSW ECVTKRDRNC HLEGVSASKG  300
GRGAPTAASN VKEAYMASIS TSKDPEKERV TDAPEGPLLA KEAVKAPTDA RKDPSGRSSV  360
AK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004504G0130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-118CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695882.11e-107PREDICTED: zinc-finger homeodomain protein 2
SwissprotA2YWA68e-87ZHD2_ORYSI; Zinc-finger homeodomain protein 2
SwissprotQ6ZB908e-87ZHD2_ORYSJ; Zinc-finger homeodomain protein 2
TrEMBLA0A0E0LW021e-105A0A0E0LW02_ORYPU; Uncharacterized protein
STRINGOPUNC08G16150.11e-105(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74660.12e-24mini zinc finger 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]