PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004023G0120
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ZF-HD
Protein Properties Length: 218aa    MW: 23097.8 Da    PI: 8.2297
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004023G0120genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer86.82.3e-271060457
      ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                      +Y+eC++NhAa+lG++a DGC+E++p+   +g++aal CaACgCHRnFHR+  
  PH01004023G0120 10 EVYRECMRNHAAKLGTYASDGCCEYTPD---DGHPAALLCAACGCHRNFHRKAF 60
                     68*************************8...789*****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.2E-221159IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.9531259IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.7E-211258IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-211258IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.69E-1692167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-2794167IPR009057Homeodomain-like
TIGRFAMsTIGR015655.2E-27105166IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEQHQERPRE VYRECMRNHA AKLGTYASDG CCEYTPDDGH PAALLCAACG CHRNFHRKAF  60
LDAAANPHAP MLPSPGAPPG YMQMAMAGAA AGMGGDGGSH SGGRRRTRTK FTEEQKARML  120
RFAERLGWRM PKREPGRAPG DDEVARFCRE IGVTRQVFKV WMHNHKAGGG SGGAGAGGGA  180
QTSSSTTRGG DGRGGMSPAT AGDGEDEEEV RGSEMCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-181041731780ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004023G0120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168474.11e-103zinc-finger homeodomain protein 11-like
SwissprotA2XLF41e-96ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV51e-96ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A3B6U0851e-104A0A3B6U085_WHEAT; Uncharacterized protein
STRINGTraes_4AL_5659286D11.11e-101(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-36homeobox protein 22