PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004020G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ZF-HD
Protein Properties Length: 325aa    MW: 35767.8 Da    PI: 7.039
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004020G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer22.13.6e-07162178420
      ZF-HD_dimer   4 vrYkeClkNhAaslGgh 20 
                      +rY+eCl+NhAa++G+h
  PH01004020G0070 162 WRYRECLRNHAARMGAH 178
                      79*************99 PP
2Homeobox18.63.2e-06228284153
                      TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                      +r Rt+ft+eq e++ e+ +    + ++p+a++     +++g++ r+ kvW +N + 
  PH01004020G0070 228 KRFRTKFTAEQRERMREFAHrvgwRIHKPDAAAVDAFCAQVGVSRRVLKVWMHNNKH 284
                      789***********987655888779****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.5E-4162178IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.6E-30218287IPR009057Homeodomain-like
SuperFamilySSF466891.32E-19221285IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-26227283IPR006455Homeodomain, ZF-HD class
CDDcd000860.00262228281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEYKRSSHVE EEEEEEEEEE EDDEEEEEEE MIKGHHYGAA AATGAPQQLH AQVLGSSASS  60
PPSLVESAAF SRPLLPPDSS LVSPPPPPPA FMSPHRHLHP RRAERERERM VEVPGEAQHQ  120
HQLQRHQQLA RNGVLGGGAT PPPVSTLALV TGGGGAVEAT PWRYRECLRN HAARMGAHKR  180
PLVPASPSSA PAALVESSSE ELRTLPPPPP HAQAAVASAS APPAPSKKRF RTKFTAEQRE  240
RMREFAHRVG WRIHKPDAAA VDAFCAQVGV SRRVLKVWMH NNKHLAKTPP PPSQPTPPLH  300
HDPPPHHHHH PPQHHQQQQQ QHDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-212262841674ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004020G0070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3580052e-93AK358005.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1066M24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826471.17e-47zinc-finger homeodomain protein 7-like
SwissprotQ8S3Q96e-36ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLA0A1E5W0S91e-50A0A1E5W0S9_9POAL; Zinc-finger homeodomain protein 7
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-22homeobox protein 22