PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003579G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 180aa    MW: 20123.5 Da    PI: 9.3853
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003579G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.91.5e-2188145258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSST.TEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedp.kvveitYegeHnh 58 
                      +Dgy+W+KYGqK +k+ +  rsY+rC  ++C +kkkve   +dp + + ++Y g H+h
  PH01003579G0140  88 EDGYEWKKYGQKFIKNIQKIRSYFRCRDKRCGAKKKVEWHPRDPgNSLRVVYDGAHQH 145
                      7**************************************999964899*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.03982148IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-2383148IPR003657WRKY domain
SuperFamilySSF1182902.62E-2084148IPR003657WRKY domain
SMARTSM007741.1E-2187147IPR003657WRKY domain
PfamPF031064.0E-2088145IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MKMEEWFVEA EGLRIQGVRA VRLEIIFVGD FIHSDDRVKL PKKMPNVKRE ETKIGIPRGS  60
GGERNQDDDQ EEQATSTGGS GRQLVIPEDG YEWKKYGQKF IKNIQKIRSY FRCRDKRCGA  120
KKKVEWHPRD PGNSLRVVYD GAHQHGSPSG RGGGDGDGDG AANQYDLSVQ FFGAGPRTQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003579G0140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1008701e-117FP100870.1 Phyllostachys edulis cDNA clone: bphylf030j09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162457.12e-51probable WRKY transcription factor 2 isoform X1
RefseqXP_020162458.12e-51WRKY transcription factor WRKY24-like isoform X2
RefseqXP_020181477.12e-51probable WRKY transcription factor 2 isoform X1
RefseqXP_020181478.12e-51WRKY transcription factor WRKY24-like isoform X2
TrEMBLA0A3B6JCH24e-50A0A3B6JCH2_WHEAT; Uncharacterized protein
TrEMBLA0A3B6JDE45e-50A0A3B6JDE4_WHEAT; Uncharacterized protein
TrEMBLA0A453GZR24e-50A0A453GZR2_AEGTS; Uncharacterized protein
TrEMBLA0A453H1145e-50A0A453H114_AEGTS; Uncharacterized protein
TrEMBLR7WD665e-50R7WD66_AEGTA; Uncharacterized protein
STRINGEMT166198e-51(Aegilops tauschii)
STRINGTraes_4DS_CFC487CE5.29e-51(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.19e-15WRKY DNA-binding protein 23