PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003510G0200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 443aa    MW: 50197.9 Da    PI: 6.8406
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003510G0200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.94.3e-26120216186
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                      +Wt+++v++Li+a ++++e+ +++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++  ++d
  PH01003510G0200 120 KWTDSMVKLLITAASYTGEDPGADLgggrrnftmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGiACNVVENPTLLD 213
                      7*********************8744455667777**********************************************89*********** PP

         trihelix  84 qle 86 
                      +++
  PH01003510G0200 214 RMD 216
                      *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.7E-19118242No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEGNNLPPGN TMQGAPYGSL DLHGNSMQMH APNSGKQVFN HSQMPGDFTV PVNRVTGPDN  60
LSGFQFGEHG KADHHHHHHH HHSHHSKNSM SDDEEHDMTE DATDNQSGKG KKSSAWHRMK  120
WTDSMVKLLI TAASYTGEDP GADLGGGRRN FTMMQKKGKW KAISKVMGER GCHVSPQQCE  180
DKFNDLNKRY KRLTDILGRG IACNVVENPT LLDRMDNLSD KIKDDARKIL NSKHLFYEEM  240
CSYHNNNRVN LPEDPALQHS LQLALRCKED HDPRRDASGD AEEDDHIADS DSEDNDEEHH  300
AVHTNMRGPS MNKRMRHTVD HGDVGFVTSS SNDGSGRSDP HGIILDINKV FPDGTNLALV  360
QKDLASQAAE LQKHRLQIEV KALELTKQRL KWERFRKKKD REMERMTLEN EQMMLENKRL  420
ELELRHKELE LELKLKGSGN HA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386397KQRLKWERFRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003510G0200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187300.10.0stress response protein NST1-like
TrEMBLA0A446KEU90.0A0A446KEU9_TRITD; Uncharacterized protein
STRINGTraes_1BL_5C07BE2D0.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-100sequence-specific DNA binding transcription factors