 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PH01003433G0110 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
GATA |
| Protein Properties |
Length: 389aa MW: 39816.9 Da PI: 9.5481 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01003433G0110 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 34 | 4.1e-11 | 244 | 267 | 1 | 24 |
GATA 1 CsnCgttkTplWRrgpdgnktLCn 24
C +C t kTp+WR gp g+ktLCn
PH01003433G0110 244 CLHCETDKTPQWRTGPMGPKTLCN 267
99********************** PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 389 aa
Download sequence Send
to blast |
MEVTAECAGG VRAKKEAGAG AGDLFLVDDL LDLPYDEEED EAAGLDGAYS AGAAGGGGEA 60
GNASADSSTV TAVDSCSNSF SGLGADGDFS GGLCGSRKLT RCIKNGNTLK YDQLAELEWL 120
SNYMGEDTFP TEDLRKLQLI SGIPAASAAG PAQPSGSVLP TEALVPGKAR SKRSRVAPCS 180
WSSRLLVLPP PPGSPPSPAS AVISPSESGT AAPPFPAKKP AKPAKKKDAP TPSVPNAAAE 240
RRRCLHCETD KTPQWRTGPM GPKTLCNDAV QRVRGAVQVG AAGAGVPAVG EPDLRRVEAL 300
QLPPQGGRAA APEGDAAPAP APAAAAAAAA RGRRRRRRRP SSRAEPAAVR WAVGAAHRRR 360
GRIPHPQPHR SRLPAAHLGT PLALELIR*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 330 | 337 | RGRRRRRR |
| 2 | 330 | 338 | RGRRRRRRR |
| 3 | 332 | 338 | RRRRRRR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP100733 | 0.0 | FP100733.1 Phyllostachys edulis cDNA clone: bphylf029n16, full insert sequence. |
