PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003202G0120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | YABBY | ||||||||
Protein Properties | Length: 237aa MW: 25153.9 Da PI: 9.8756 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 179.3 | 2.3e-55 | 20 | 191 | 24 | 170 |
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes....hldeslkee............lleelkveeenlksnvekeesastsvssekl 101 v vP slfk+vtvrCGhC++llsvnl+ aa h+++sl + + +++l + + + + + + +s++ PH01003202G0120 20 VGVPCGSLFKTVTVRCGHCANLLSVNLRGLLLPPAAPPanqlHFGHSLLSPtsphglldevafQ-------TSSLLMDQASATLSGITGRSNSS 106 89**************************999544443300014445554448899966665552.......44433333222211111111111 PP YABBY 102 ...............senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++ e+p+ p + rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl PH01003202G0120 107 casnvpampmpaakpAQQQEPELPKSAPpATRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 191 11122223558887666777788886544******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.2E-55 | 20 | 191 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.41E-8 | 130 | 184 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.5E-4 | 139 | 183 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MALGLVDMSG TWRVVQRRYV GVPCGSLFKT VTVRCGHCAN LLSVNLRGLL LPPAAPPANQ 60 LHFGHSLLSP TSPHGLLDEV AFQTSSLLMD QASATLSGIT GRSNSSCASN VPAMPMPAAK 120 PAQQQEPELP KSAPPATRPP EKRQRVPSAY NRFIKDEIQR IKAGNPDITH REAFSAAAKN 180 WAHFPHIHFG LMPDQGLRKT FKTQDGAEDM LLKDGLYAAA AAAAAAAAAN MGVTPF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003202G0120 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274016 | 0.0 | AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds. | |||
GenBank | AK106784 | 0.0 | AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155221.1 | 1e-131 | protein YABBY 4-like isoform X2 | ||||
Swissprot | A2X7Q3 | 1e-109 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 1e-109 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A3B6QIK7 | 1e-129 | A0A3B6QIK7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453P642 | 1e-129 | A0A453P642_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6DL_59DB06B9F.1 | 1e-126 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-49 | YABBY family protein |
Publications ? help Back to Top | |||
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