PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003119G0170
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 450aa    MW: 48163.8 Da    PI: 7.7933
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003119G0170genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-10275316854
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + r+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  PH01003119G0170 275 ASRQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 316
                      669*******************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-2040129IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.535267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.99E-12270320No hitNo description
SMARTSM003533.6E-13273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-16274343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-8275316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-16276337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MEAFMASADL PAFPWGAAGA SNAATPPPPA LVPAFNQDTL QQRLQAIIEG SREAWTYAIF  60
WQSSIDVATG ASLLGWGDGY YKGCDDGKRK QRPSTPQSQA EQEHRKRVLR DLNSLISGAG  120
AAPDEAVEEE HQHSQAHQGP FRRELNFSDF ASNTSVAAAP PFFKPESGEI LNFAADSTSR  180
RNPSPAPPAA IASLTTAPGS LFSQHTATVT AAANDAKNNP KRSMEATSRA SNTNHHPATT  240
ANEGMLSFSS APTTRPSSGT GAPAKSESGH SDVEASRQRR EKLNQRFYAL RAVVPNVSKM  300
DKASLLGDAI SYINELRGKL NALESDKETL HSQIEVLKKE RDARPPAPSS GQGGGLDGGA  360
HCHAVEIEAK ILGLEAMIRM QCHKRNHPAA RLMTALRELD LDVYHASVSV VKDLMIQQIA  420
VKMASRVYSQ EQLNAALYSR IAEPGAAGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-26331302100Transcription factor MYC3
4rqw_B2e-26331302100Transcription factor MYC3
4rs9_A2e-26331302100Transcription factor MYC3
4yz6_A2e-26331302100Transcription factor MYC3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003119G0170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0607551e-177AC060755.9 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence.
GenBankAK2880821e-177AK288082.1 Oryza sativa Japonica Group cDNA, clone: J075172G09, full insert sequence.
GenBankAP0149661e-177AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankAY5364281e-177AY536428.1 Oryza sativa MYC protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165313.11e-175transcription factor MYC2-like
SwissprotQ336P51e-168MYC2_ORYSJ; Transcription factor MYC2
TrEMBLF2D7F11e-175F2D7F1_HORVV; Predicted protein
STRINGMLOC_71611.21e-178(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.12e-62bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]