PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003096G0200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 922aa    MW: 102286 Da    PI: 5.1589
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003096G0200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.92.4e-20159258186
                      EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                      f+k lt sd++++g +++p++ ae+                ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+
  PH01003096G0200 159 FCKNLTASDTSTHGGFSVPRRAAEKLfpqllieyvldpqdySMQPPN-QELIVRDLQDNLWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDS 251
                      89*********************999*************99555555.49******************************************** PP

                      EEEEE-S CS
               B3  80 vvFkldg 86 
                      v+F +++
  PH01003096G0200 252 VLFIRTS 258
                      ***8543 PP
2Auxin_resp83.83.6e-282563211883
       Auxin_resp  18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      r+s+s Fv+++++++ka++++ svGmRf m+fete+ss+rr++Gt+vg+sd+dp+rWpnSkW +L+
  PH01003096G0200 256 RTSPSPFVIPLARYNKATYIQPSVGMRFAMMFETEESSKRRYTGTIVGISDYDPMRWPNSKWSNLQ 321
                      799***********************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-35149262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-30152262IPR015300DNA-binding pseudobarrel domain
CDDcd100172.14E-17158254No hitNo description
SMARTSM010194.9E-16159270IPR003340B3 DNA binding domain
PfamPF023623.8E-18159258IPR003340B3 DNA binding domain
PROSITE profilePS5086311.279159270IPR003340B3 DNA binding domain
PfamPF065071.5E-23256321IPR010525Auxin response factor
PfamPF023096.5E-10806904IPR033389AUX/IAA domain
SuperFamilySSF542771.37E-8811896No hitNo description
PROSITE profilePS5174524.655817901IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MATSQEKPKS GVLWNAAALL DEMQLLGETQ SAKKVINSEL WHACAGPLVC LPQRGSLVYY  60
FAQGHSEQCK LRLYPWNAEV FLWQVAATTR KIPNSRIPNY PNLPSQLLCQ VHNITLHADK  120
DTDEIYAQMT LQPVNSESDM FPIPTLGTYT KSKNPSEYFC KNLTASDTST HGGFSVPRRA  180
AEKLFPQLLI EYVLDPQDYS MQPPNQELIV RDLQDNLWTF RHIYRGQPKR HLLTTGWSLF  240
VGAKRLKAGD SVLFIRTSPS PFVIPLARYN KATYIQPSVG MRFAMMFETE ESSKRRYTGT  300
IVGISDYDPM RWPNSKWSNL QVEWDEHGYG ERPERVSIWD IETPENTLVF PSPALNSKRQ  360
CLPSYGVPGL EIGSANMTSF PRAQGNPYGN LQNMPAIGSE LATMLLNQSS QNLGTPLSCH  420
QSSYSSIIQN VKQNYVPPST IFGTSTGPIK QEIMPSNEAQ QQLHIPKMQK GELESCEVQP  480
VMDSISASEL NVTAREPRDT DSYPSQSISE QNSKGEPRAK TCRSKKGLSH KTISEKSDLS  540
APSRICDDQQ HGLEAKLVDC DAEQVSCGNN EDSSGALTQG NFAGQTQGQE VEQNGLLSPP  600
KLESSKSLGG GKSVNSFPNQ GCFSQFLDGL DWMIQPSFYQ DSNGIQSVSA SENIFSSSAD  660
IPSTINADNV ETFQTSCLSD CFPNSIQEFI CSPDLNSLTF LSPEMQNLEV QHDGSNLPST  720
SNSYVQMSFS EESGNQSAIL NGLHLESIQR SMNNTSCSQP QTTGVFDAAM YSKLPSLKES  780
LVLSLQEIHN SSMGTSSCSM DATEYSRSAK PMKQPVRTYT KVQKQGSVGR SIDVTRFRDY  840
HELRSAIACM FGLQGKLEHP GSSDWKLVYV DYENDVLLVG DDPWEEFINC VRCIRILSPS  900
EVQQMSENGM HVLNDCIQTA Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1491734431390Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003096G0200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881052.10.0auxin response factor 11-like isoform X1
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLA0A0E0PFA60.0A0A0E0PFA6_ORYRU; Auxin response factor
STRINGORUFI04G30260.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.11e-155ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]