PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003034G0090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bZIP | ||||||||
Protein Properties | Length: 143aa MW: 16476.9 Da PI: 10.735 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.6 | 2.6e-13 | 31 | 85 | 3 | 57 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 e kr rk++NRe+ArrsR RK++ ++ L+ k+L+++N++L l++ +++ PH01003034G0090 31 EKKRKQRKESNRESARRSRMRKQQHLDDLTSQGKQLKNQNQQLSMALSMTTQNLV 85 569****************************************999888777655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.2E-11 | 26 | 84 | No hit | No description |
SMART | SM00338 | 1.5E-11 | 29 | 93 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.622 | 31 | 94 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.1E-10 | 31 | 79 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.38E-11 | 33 | 84 | No hit | No description |
CDD | cd14702 | 1.39E-12 | 34 | 82 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 37 | 51 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MTMSSGTSSG SSQGARSFRL EDDLDLQARM EKKRKQRKES NRESARRSRM RKQQHLDDLT 60 SQGKQLKNQN QQLSMALSMT TQNLVAVQAQ NSVLQTQKME LESRLCALRM FWLSCSWWQR 120 RCEVGLYWLL KVLLYAPDAS LS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 52 | RRSRMRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003034G0090 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP098797 | 1e-99 | FP098797.1 Phyllostachys edulis cDNA clone: bphylf050c02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006660520.1 | 2e-50 | PREDICTED: ocs element-binding factor 1-like | ||||
TrEMBL | A0A0A9GYA3 | 2e-49 | A0A0A9GYA3_ARUDO; Uncharacterized protein | ||||
STRING | OB09G13080.1 | 1e-49 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3740 | 32 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 5e-19 | basic leucine-zipper 44 |