PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002899G0130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | G2-like | ||||||||
Protein Properties | Length: 212aa MW: 23105.4 Da PI: 10.2314 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.1 | 1.7e-32 | 108 | 161 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ PH01002899G0130 108 PRMRWTTALHARFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 161 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 25 | No hit | No description |
SuperFamily | SSF46689 | 3.05E-16 | 105 | 161 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-29 | 106 | 161 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.8E-24 | 108 | 161 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-8 | 109 | 160 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005618 | Cellular Component | cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MLQRNQLPNL SLRISPPAVS SAASCDITTA AKPLPTEPNA ETYAEGSGEV GFFANPSSGA 60 EPPGLSLGLG TPAHADAGRQ SHLQPQGCAF KRAARTSLPG SKRSVRAPRM RWTTALHARF 120 VHAVELLGGH ERATPKSVLE LMNVKDLTLA HVKSHLQMYR TVKGTDRSSS HITEGIPIAF 180 PEEILHCQLP ADRRPCRAKR RWPFYFMPYH E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-17 | 109 | 163 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-17 | 109 | 163 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-17 | 109 | 163 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-17 | 109 | 163 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-17 | 109 | 163 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-17 | 109 | 163 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-17 | 109 | 163 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-17 | 109 | 163 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-17 | 109 | 163 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-17 | 109 | 163 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-17 | 109 | 163 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-17 | 109 | 163 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00107 | PBM | Transfer from AT5G42630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002899G0130 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094880 | 0.0 | FP094880.1 Phyllostachys edulis cDNA clone: bphylf040g11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466395.1 | 3e-78 | probable transcription factor GLK2 | ||||
Swissprot | Q9FJV5 | 2e-42 | KAN4_ARATH; Probable transcription factor KAN4 | ||||
TrEMBL | F2ED93 | 2e-81 | F2ED93_HORVV; Predicted protein | ||||
STRING | Pavir.Ia00330.1.p | 5e-83 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6554 | 37 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.2 | 1e-45 | G2-like family protein |
Publications ? help Back to Top | |||
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