PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002891G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 288aa    MW: 31628.9 Da    PI: 6.427
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002891G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.91e-322377155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     ++rlrWt+eLHerFveav+qLGG+++AtPk +l++m+ +gLt++hvkSHLQkYRl
  PH01002891G0030 23 RQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGEPGLTIYHVKSHLQKYRL 77
                     58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.9922080IPR017930Myb domain
SuperFamilySSF466891.79E-172277IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-312278IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-252478IPR006447Myb domain, plants
PfamPF002493.9E-92576IPR001005SANT/Myb domain
PfamPF143797.1E-19110155IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MELGVNDMGP NNGANNNPNL AARQRLRWTN ELHERFVEAV TQLGGPDRAT PKGVLRIMGE  60
PGLTIYHVKS HLQKYRLAKY IPDSSTDANR TDNNDPGDLV AGLEGSSRLQ ISEALKLQRE  120
VQNRLHQQLE VQRQLQLRIE AQGKYLKKII EEQQRLSGVK SETPAAGASV TVSSDRFPDS  180
ERTDPSTPAP ISESPTQGVP SNRDNGGRAE ATKSPCHDDS LSLREPLTPD SDCQPGSPTV  240
SPKHERAAKR QRGSGTEFSE ADFALPHHIL EPSSESELQQ CSMSYSGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-232380158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-232380158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-232380158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-232380158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002891G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0984560.0FP098456.1 Phyllostachys edulis cDNA clone: bphyem206h20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611984.10.0myb family transcription factor PHL7 isoform X1
SwissprotQ9SJW03e-95PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0E0B1200.0A0A0E0B120_9ORYZ; Uncharacterized protein
STRINGOGLUM09G05280.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.17e-82G2-like family protein