PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002807G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 700aa    MW: 75662.2 Da    PI: 5.3121
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002807G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185e-06460482225
                      -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                      k ++C +far G C  Gd C++ H
  PH01002807G0140 460 KSKPCTHFAR-GSCLKGDDCPYDH 482
                      6789******.************* PP
2zf-CCCH28.23.2e-09488509526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f+++G C +Gd+CkF+H+
  PH01002807G0140 488 PCHNFLENGMCVRGDKCKFSHV 509
                      7********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.263429456IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5430454IPR000571Zinc finger, CCCH-type
SMARTSM003560.37430455IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4457483IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5458484IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281458485IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5460483IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016486510IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6487514IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4488508IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5488509IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249488511IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MEDALAPHTA PPGPLAVPAA VVLTRRRSHL DSASYRTLSR LFSHCLHLHS SRHVAPAHPD  60
VEPAAANPIV DSGEPLHGGS APPKDPEFDR VKDVEEEAAV ENPIPYETLA PSGVQLAAAN  120
PIAEPGVAPQ GSPELEVTGV ERAEGIEEMI VVGSTCSKTG AFVEELRGGA GLVGEDEAFR  180
SMKACLGREA EESVEVAVGN DNEQLLLDAM MTNFSGLIDD VSGGTMSAQS CGISGGDLQN  240
DGKVAEEVKE LGGWIKEDRP VGNSDLGSVD GGRFEEGEIE GDMQDLDADE SGNLELEVEN  300
ADDERLEEDF VSRGSGKNES CDNDTRDQNL HSMPKIKGNG DFVLNKEGNT KDDAQMPVAR  360
AQAVSYVEVV DWNEAPLPDD ETTQPGKKRK RHLTEERKAK KTKNKRVKRA QQRIAEGVKR  420
LKLQPVIKPK VVQYCRFYLH GKCQQGNICK FSHDTTPLTK SKPCTHFARG SCLKGDDCPY  480
DHELSKYPCH NFLENGMCVR GDKCKFSHVM PTPEGPSTPD AKKSDLPLVS EKANRREQTS  540
SQKTSTVYNG EPVTSAPTKH YSILKNLADV SVNAQKTSAC IPKGVQFLLF SKDRSDSSIL  600
HQDALSTEKY RRTNGGEHHN FGGPQAAEGE KIVTQNGHRS APLLDDKKLS KEATSHPCSE  660
PKKASLPTDS TAVLGSVSTQ HEVSEASRIL QEFLFGAGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002807G0140
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184316.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184317.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184318.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184319.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184320.10.0zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A3B6GT470.0A0A3B6GT47_WHEAT; Uncharacterized protein
STRINGEMT283410.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.27e-07C3H family protein
Publications ? help Back to Top
  1. Noller B,Fischer I
    Photodissociation dynamics of the 2-propyl radical, C3H7.
    J Chem Phys, 2007. 126(14): p. 144302
    [PMID:17444707]
  2. Ali MA,Dillstrom VT,Lai JY,Violi A
    Ab initio investigation of the thermal decomposition of n-butylcyclohexane.
    J Phys Chem A, 2014. 118(6): p. 1067-76
    [PMID:24344976]