PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002648G0060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | Trihelix | ||||||||
Protein Properties | Length: 399aa MW: 46124.3 Da PI: 6.5884 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 71.1 | 2e-22 | 86 | 183 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt ++v++L+ a+++++e+++ + ++k++W+ vs +m +rgf +sp+qC++k+++lnkryk+++e+ +++ +++++++ p+ PH01002648G0060 86 KWTSDMVKLLVSAVSYIDEDVEMDYgtsngrrkhamlKRKGKWKLVSTAMTDRGFAVSPQQCEDKFNDLNKRYKRLTEILGRGtSCQVVEHPPL 179 7**************888888854233446677888899********************************************66999999999 PP trihelix 82 fdql 85 ++ + PH01002648G0060 180 LEGM 183 8877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.0E-20 | 84 | 209 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MEGNLPPRTL IPGAPFDLEA SMHSQQQPFH FAQPQLHQGM FPVPATIPMQ DLGNVVKTSL 60 SDDEDADDGH HHDRGGKVAS QWHRVKWTSD MVKLLVSAVS YIDEDVEMDY GTSNGRRKHA 120 MLKRKGKWKL VSTAMTDRGF AVSPQQCEDK FNDLNKRYKR LTEILGRGTS CQVVEHPPLL 180 EGMSLSGKLK EEARKLLSSK HLHYEEMCSY HNRNRLCLLD DPVLQKSLRL ALRSRDEHGK 240 KSSFGYDDED DQMMLSDDDD EDDEFNDDIE VSAEDHHHRS HGAKRLKFDH EETQFGSHLS 300 EVAAIDMNKM FCEGLGGPSA EKNPPGMHEI QIEKHRLKIK TQMLKIEQRH LKWLRFSKEK 360 DRELQMMRLE NEKMRLENER LELELKLKEI EMGVKPKKI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002648G0060 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096890 | 0.0 | FP096890.1 Phyllostachys edulis cDNA clone: bphyem211a14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014757160.1 | 0.0 | uncharacterized protein LOC100828617 | ||||
TrEMBL | A0A0A9DXA8 | 0.0 | A0A0A9DXA8_ARUDO; Uncharacterized protein | ||||
STRING | BRADI3G45300.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12774 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 5e-70 | sequence-specific DNA binding transcription factors |