PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002645G0100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 272aa    MW: 28685.3 Da    PI: 9.7177
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002645G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.33.5e-1595146256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q  +Lee+F+ +++++ +++  LA++lg   rqV vWFqNrRa+ k
  PH01002645G0100  95 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLG---RQVEVWFQNRRARTK 146
                      678899******************************7...*************98 PP
2HD-ZIP_I/II1093.4e-3595182192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lg   rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLeke ++Lr +lk
  PH01002645G0100  95 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLG---RQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLR-ALK 182
                      69**********************************8...***********************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-1370149IPR009057Homeodomain-like
PROSITE profilePS5007112.71491148IPR001356Homeobox domain
SuperFamilySSF466897.27E-1492146IPR009057Homeodomain-like
SMARTSM003892.1E-1093152IPR001356Homeobox domain
PfamPF000461.6E-1295146IPR001356Homeobox domain
CDDcd000866.59E-1395149No hitNo description
SMARTSM003409.4E-21148191IPR003106Leucine zipper, homeobox-associated
PfamPF021831.2E-9148182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MPRSLDLGLS LGLGLASQGS LSSSTTTTSS PASPWSAALN SIVGAVGDAR GAVEDQGRTS  60
TSPDSTAALS SASGKRELER TGSGAAAGSD EEDGRKKLRL SKDQAAVLEE CFKTHSTLNP  120
KQKVALANRL GRQVEVWFQN RRARTKLKQT EVDCEYLKRW CERLADENKR LEKELADLRA  180
LKAAPSPASA LQPSSAATLT MCPSCRRVAT AGAPQPNKQC HPKFNIPAAA AAPAVAGNVL  240
PSHCQFFPTA ADRTSQSTWN AAAPLVTREL F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002645G0100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0932880.0FP093288.1 Phyllostachys edulis cDNA clone: bphylf053m07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656619.11e-114PREDICTED: homeobox-leucine zipper protein HOX2-like
SwissprotQ5VPE31e-97HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2
SwissprotQ84U861e-97HOX2_ORYSI; Homeobox-leucine zipper protein HOX2
TrEMBLJ3MB451e-112J3MB45_ORYBR; Uncharacterized protein
STRINGOB06G12390.11e-113(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-47homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]