PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002594G0170
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 540aa    MW: 57052.8 Da    PI: 6.5531
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002594G0170genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.6e-074675051854
                      HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +Fe+   +yp+ +e+  LA++ gL  +qV++WF N R +
  PH01002594G0170 467 MFENflRPYPKDSEKDMLAARSGLCRNQVSNWFINARVR 505
                      57766689*****************************88 PP
2BELL30.49.7e-11328401472
             BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeava.....glgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e q+ ++ Ll++l+ +d++Y+q+ +++q   + F+  +     g g+  + + +A +a+S  +r L  +i++ i
  PH01002594G0170 328 EAQRVRSELLKMLQLMDQKYNQCLDEIQSTTAKFNNLMqsgsvGSGNGSICAPFAHRAVSAMYRGLTRRITGEI 401
                      66778899***************************9873333367778999******************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.8E-25246398IPR006563POX domain
PROSITE profilePS5007110.884446509IPR001356Homeobox domain
SMARTSM003892.9E-6449513IPR001356Homeobox domain
CDDcd000862.41E-10449510No hitNo description
Gene3DG3DSA:1.10.10.601.0E-23449520IPR009057Homeodomain-like
SuperFamilySSF466891.45E-14450518IPR009057Homeodomain-like
PfamPF059201.6E-15466505IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MSSNPSFSQF GVDTMNGYFM GSSSGMLSAD VPPFHPGMPP PDHGAFGLGF CFGDAVVGGA  60
TAAADIGAQF AANNLMLASL ASQLFAPAPA PHGGHLGART TPVEMNGGYD VAGGDSSGAA  120
SLPCPGQSDA HAMAVWPSSK KPYCDWSNAD ESRTVSLHGS YHLAGPPEAA GFHYQLAAAG  180
HSTAAPSELS LSLCSKSSSD SMVNVADHCS SEASRSGLTH ISRVESELPQ VYYPQALSRP  240
AHFAMVVARS RYAAVAQQLL NDVVGHVLGG VAEAAADSAS GVDSGTRPSL QASSCSAGAP  300
SAVSSNNQLM ASPEQYPHGR DAGARWGEAQ RVRSELLKML QLMDQKYNQC LDEIQSTTAK  360
FNNLMQSGSV GSGNGSICAP FAHRAVSAMY RGLTRRITGE IMVAAASGPS LGESSVTAAA  420
GERERSWESA FIQKHWAVQQ LRRGEQQCWR PQRGLPEKSV AVLKAWMFEN FLRPYPKDSE  480
KDMLAARSGL CRNQVSNWFI NARVRLWKPM IEEMYEELKR SSGGGEGLAM EHLSQDDVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002594G0170
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951423.10.0homeobox protein ATH1
RefseqXP_004951424.10.0homeobox protein ATH1
RefseqXP_004951425.10.0homeobox protein ATH1
RefseqXP_004951426.10.0homeobox protein ATH1
RefseqXP_022680719.10.0homeobox protein ATH1
RefseqXP_022680731.10.0homeobox protein ATH1
RefseqXP_022680746.10.0homeobox protein ATH1
RefseqXP_022680778.10.0homeobox protein ATH1
RefseqXP_022680845.10.0homeobox protein ATH1
TrEMBLA0A0A9NF720.0A0A0A9NF72_ARUDO; Uncharacterized protein
STRINGOPUNC02G08420.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-53homeobox gene 1