PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002396G0190
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 344aa    MW: 37227.4 Da    PI: 6.2802
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002396G0190genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.91.7e-22136197259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                      +Dgy+WrKYG K+++g++f++sY+rCt++   gC+++k+++++ ++dp ++++tY++eH+++
  PH01002396G0190 136 EDGYQWRKYGEKKIHGAHFAKSYFRCTYKddkGCQATKQIQQKdSSDPPMFQVTYNNEHTCT 197
                      8***************************99999*******875268**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-22126197IPR003657WRKY domain
SuperFamilySSF1182901.44E-20129197IPR003657WRKY domain
SMARTSM007743.2E-32135198IPR003657WRKY domain
PfamPF031068.1E-24136196IPR003657WRKY domain
PROSITE profilePS5081117.132136199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MADCLPDRDG AVREVAQVYE LIKTHQPLLL LVHADERAAP SLSTTTLLAQ NLLNEALRAL  60
NVALSVLKRQ QPSASAAAPA SVKAEPHVLS SSSPAANSSG SPAPGDRKQV RRAGKRRRRA  120
EEDKYSWVNM TAVPHEDGYQ WRKYGEKKIH GAHFAKSYFR CTYKDDKGCQ ATKQIQQKDS  180
SDPPMFQVTY NNEHTCTVCT TATGAAANNS NLASLLGYDC NTAAGINYPN ARPADQHAGS  240
RMIEQEPQAA LPPVAAQVAS DLGQTPWQEA FPVSNTHCGP SPYNGIASTA STGSCSNVSA  300
LSCVDESDQI TVMDHEPALE LGDDPFFYDD PHLLLLYDSF KYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-13128194974Disease resistance protein RRS1
5w3x_D3e-13128194974Disease resistance protein RRS1
6ir8_A2e-13136196968OsWRKY45
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002396G0190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006663747.13e-79PREDICTED: probable WRKY transcription factor 53
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-19WRKY family protein