PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002247G0090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ZF-HD | ||||||||
Protein Properties | Length: 94aa MW: 9446.37 Da PI: 6.4688 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 95.9 | 3.3e-30 | 9 | 63 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +vrY eC++NhAas+Gg+avDGC+Ef+++ geegt+ al+CaACgCHR+FHRr + PH01002247G0090 9 GVRYGECRRNHAASMGGYAVDGCREFLAE-GEEGTSGALRCAACGCHRSFHRRVGA 63 79**************************8.999********************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-17 | 8 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.1E-29 | 10 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.4E-23 | 11 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.784 | 12 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MAFGGCCGGV RYGECRRNHA ASMGGYAVDG CREFLAEGEE GTSGALRCAA CGCHRSFHRR 60 VGAQHCCCDD AATAAGGGWD CSPESTASST TAS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002247G0090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107904 | 1e-48 | AK107904.1 Oryza sativa Japonica Group cDNA clone:002-134-F11, full insert sequence. | |||
GenBank | AP005159 | 1e-48 | AP005159.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11. | |||
GenBank | AP014964 | 1e-48 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 1e-48 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. | |||
GenBank | CT831443 | 1e-48 | CT831443.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA034C07, full insert sequence. | |||
GenBank | CT831444 | 1e-48 | CT831444.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA001I02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021321184.1 | 3e-33 | mini zinc finger protein 4 | ||||
Swissprot | Q0J5F8 | 4e-34 | MIF4_ORYSJ; Mini zinc finger protein 4 | ||||
TrEMBL | A0A3L6RK52 | 6e-33 | A0A3L6RK52_PANMI; Mini zinc finger 3 | ||||
TrEMBL | B6U404 | 8e-33 | B6U404_MAIZE; Mini zinc finger 3 | ||||
STRING | ONIVA08G17170.1 | 1e-32 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1431 | 34 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74660.1 | 3e-25 | mini zinc finger 1 |
Publications ? help Back to Top | |||
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