PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002238G0110
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 342aa    MW: 36843.3 Da    PI: 5.4556
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002238G0110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.63.4e-25156215258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      +Dg+ WrKYGqK++++s++pr Y+rCt++   gC+++++v++s++dp++ +itY geH++
  PH01002238G0110 156 EDGFIWRKYGQKDIQNSKYPRLYFRCTYKydsGCRATRQVQQSEDDPSLYVITYFGEHTC 215
                      8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-25151215IPR003657WRKY domain
SuperFamilySSF1182909.94E-24152215IPR003657WRKY domain
SMARTSM007741.6E-37155217IPR003657WRKY domain
PfamPF031066.7E-25156215IPR003657WRKY domain
PROSITE profilePS5081119.887156213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MALATGTRTT NQASSMVSEL MAQGRESAAV LEALLQGASP PVHGGLQDLA AQILRCCDRA  60
LAALHGSSGG EDVNLAELSA GGCAGAGRKR KSAPGCATTQ MKPKTRWSTN LHECPLRWRY  120
MYMRTNNSAR SFLANRRARG SGGEMPTRVE KKWTAEDGFI WRKYGQKDIQ NSKYPRLYFR  180
CTYKYDSGCR ATRQVQQSED DPSLYVITYF GEHTCCGAAA AAAAVGDDGK MQPFVINFGS  240
ATASGGGLPW LSSSDDDVRS EASHSSQTVC LPEEADQPRA KMCKVEPPPA AAEASSSADV  300
SCASPVMEPL PGCLDWDFFG ESLFDDIVEF VNFDDEIPLF Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-24156215968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002238G0110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0989771e-177FP098977.1 Phyllostachys edulis cDNA clone: bphyem114k07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177373.11e-112WRKY transcription factor 44-like
TrEMBLA0A0U2USI61e-110A0A0U2USI6_WHEAT; WRKY transcription factor 1
TrEMBLA0A452ZCR51e-110A0A452ZCR5_AEGTS; Uncharacterized protein
TrEMBLR7WCZ21e-110R7WCZ2_AEGTA; Putative WRKY transcription factor 70
STRINGEMT198781e-111(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-23WRKY DNA-binding protein 70