PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01002204G0210

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NF-YC

Protein Properties

Length: 987aa MW: 109727 Da PI: 5.2589

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01002204G0210	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	33.6	8.3e-11	586	641	21	75
NF-YC 21 lPl.arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlk 75 l + +rikki++adedv +i+ +Pvl+s+a elf+ +l +++ + ++ +tl+ PH01002204G0210 586 LTVeSRIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDQTYEITLQSGAKTLN 641 54438**********************************99999888888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01082	1.8E-9	499	534	IPR019098	Histone chaperone domain CHZ
Pfam	PF09649	1.5E-9	500	532	IPR019098	Histone chaperone domain CHZ
Gene3D	G3DSA:1.10.20.10	4.5E-18	582	644	IPR009072	Histone-fold
SuperFamily	SSF47113	4.59E-10	590	645	IPR009072	Histone-fold
Pfam	PF00808	1.5E-12	590	644	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 987 aa Download sequence Send to blast
MEANAAAARR REAEIEKAIR SRVPDFKKQA DSLTLEGVRR ALEKDMGLEI YSLDAHKKFI 60 KQCVDKVFSG SDDENTNNNA SEKAETKDDH SSKEGSEDAQ PVSGSNKISP SAYEQGARFS 120 ETEKDPEGQE EASGSDISEA MIKKAIDKRA SYFRENSDGA VNIQLISTFV RVEVEAIGLD 180 HTLSNSWNHG GTVYELKVRN LIALYIADLE MNYKQCRTLT LLGVRRTLEE DLKLEKKALD 240 GYRSFITTEL DEVLQEPANA TTKNSKKESR KDADQKTSKG SKRAHQDSDT SEINDSHSER 300 EDGDEDTRPK KRGFEKGKVK KRQKISKEEK KLSTRKAKKV AKRDLDKSTE DQGGNSAEED 360 NSHSSAEEGK AKKRQKIAKV EKKLSTPKAK KVAKRDLDKS TEEQGGNSAE EDNSHSSAEE 420 DNKKKGQLAP AYGKRVEHLK SIIKSCGMSI TPSVYRRAKQ APESKREAWL IKELEDILER 480 EGLSKNPSEK EIKAVKKRKE RAKELEGIDM SNIITSSRRR STSSFIPLPK PKIEADSDDD 540 DAKDDGDDEE NVEGGDEGDN DDAEAGDVTA RKYLLVLVQK KINAQLTVES RIKKIMQADE 600 DVGKIALAVP VLVSRALELF LQDLIDQTYE ITLQSGAKTL NSFHFFHLSS QLTLNLEIVQ 660 LLRLKFGCLD VDIGESHKPK ILGLFLFGLL ELKPLEMPSL CCMDYQHVEF ELNELAALRQ 720 LCEVEPAASG PWPTGSGGDE YRVRERLQSG VSGYHSGNYS CDFWYLSSRI FANMFMLVFQ 780 LVPLVTNGLY VSSEMLRKQC VKRYSSFDFL TEVVNKVPDL GGADSCGDER GLPKRRKALS 840 NGSDPENEES RSSKMAIRSS NISPRGRGRG RGRGRGRPPT KRKEVGYVQF EDESSMFAEQ 900 GEPLPGDDIV PETIDGNESI PQSTHPPVED PSATAPAANS KVEEANTDHQ PDWPMPEAIG 960 NIGVGPSGFG HLTVQVDEDE DYDNED*

Sequence ? help Back to Top

Protein Sequence Length: 987 aa Download sequence Send to blast

MEANAAAARR REAEIEKAIR SRVPDFKKQA DSLTLEGVRR ALEKDMGLEI YSLDAHKKFI  60
KQCVDKVFSG SDDENTNNNA SEKAETKDDH SSKEGSEDAQ PVSGSNKISP SAYEQGARFS  120
ETEKDPEGQE EASGSDISEA MIKKAIDKRA SYFRENSDGA VNIQLISTFV RVEVEAIGLD  180
HTLSNSWNHG GTVYELKVRN LIALYIADLE MNYKQCRTLT LLGVRRTLEE DLKLEKKALD  240
GYRSFITTEL DEVLQEPANA TTKNSKKESR KDADQKTSKG SKRAHQDSDT SEINDSHSER  300
EDGDEDTRPK KRGFEKGKVK KRQKISKEEK KLSTRKAKKV AKRDLDKSTE DQGGNSAEED  360
NSHSSAEEGK AKKRQKIAKV EKKLSTPKAK KVAKRDLDKS TEEQGGNSAE EDNSHSSAEE  420
DNKKKGQLAP AYGKRVEHLK SIIKSCGMSI TPSVYRRAKQ APESKREAWL IKELEDILER  480
EGLSKNPSEK EIKAVKKRKE RAKELEGIDM SNIITSSRRR STSSFIPLPK PKIEADSDDD  540
DAKDDGDDEE NVEGGDEGDN DDAEAGDVTA RKYLLVLVQK KINAQLTVES RIKKIMQADE  600
DVGKIALAVP VLVSRALELF LQDLIDQTYE ITLQSGAKTL NSFHFFHLSS QLTLNLEIVQ  660
LLRLKFGCLD VDIGESHKPK ILGLFLFGLL ELKPLEMPSL CCMDYQHVEF ELNELAALRQ  720
LCEVEPAASG PWPTGSGGDE YRVRERLQSG VSGYHSGNYS CDFWYLSSRI FANMFMLVFQ  780
LVPLVTNGLY VSSEMLRKQC VKRYSSFDFL TEVVNKVPDL GGADSCGDER GLPKRRKALS  840
NGSDPENEES RSSKMAIRSS NISPRGRGRG RGRGRGRPPT KRKEVGYVQF EDESSMFAEQ  900
GEPLPGDDIV PETIDGNESI PQSTHPPVED PSATAPAANS KVEEANTDHQ PDWPMPEAIG  960
NIGVGPSGFG HLTVQVDEDE DYDNED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-14	579	645	5	70	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	492	498	KAVKKRK
2	866	875	RGRGRGRGRG
3	866	876	RGRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01002204G0210

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP099110	0.0	FP099110.1 Phyllostachys edulis cDNA clone: bphyem113o06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615081.1	1e-179	HIRA-interacting protein 3
TrEMBL	A0A0E0MG54	1e-178	A0A0E0MG54_ORYPU; Uncharacterized protein
TrEMBL	Q2R2Z3	1e-178	Q2R2Z3_ORYSJ; Expressed protein
STRING	OS11T0544600-01	1e-178	(Oryza sativa)
STRING	OPUNC11G13430.1	1e-178	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7960	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-24	nuclear factor Y, subunit C11