PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002131G0260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 251aa MW: 27484.3 Da PI: 10.6669 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.4 | 2.4e-35 | 18 | 156 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyat..gkrknr.atksgyWk.atgkd 89 lppGfrFhPtdeelvv+yL++k+ g +l++ vi+ev d+yk++Pwd+p a+e e yfF+ r + ++ g r +r +t+sg Wk a g+ PH01002131G0260 18 LPPGFRFHPTDEELVVQYLRRKALGFPLPA-AVIPEVhDLYKLDPWDIP---GASEGEKYFFAVRPAAGTKrdGGRCRRaTTASGCWKpAGGRG 107 79****************************.8999999***********...3456799***9998876643388****7788*****556778 PP NAM 90 kevlsk...kgelvglkktLvfy....kgrapkge...ktdWvmheyrl 128 ++v+s+ +++lvg+k+++vf kg+ap+++ +tdWvmheyr+ PH01002131G0260 108 RPVVSSrcgGNHLVGVKRSMVFVlrgkKGKAPRASparQTDWVMHEYRV 156 9999989988899**********988866666544444*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.15E-44 | 15 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.839 | 18 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-22 | 19 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MERAPVLARQ GGLVLKQLPP GFRFHPTDEE LVVQYLRRKA LGFPLPAAVI PEVHDLYKLD 60 PWDIPGASEG EKYFFAVRPA AGTKRDGGRC RRATTASGCW KPAGGRGRPV VSSRCGGNHL 120 VGVKRSMVFV LRGKKGKAPR ASPARQTDWV MHEYRVTLPP HKNGCLAQAE EWVVCRIFQR 180 NRASRRPDHD ERRVPVGHAT AAHRTMMPPP SLSASSSSSC VTSSSDQEEV SSGHKHKQDA 240 GAAEAASQRE A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-35 | 18 | 186 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-35 | 18 | 186 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-35 | 18 | 186 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-35 | 18 | 186 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-35 | 18 | 186 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-35 | 18 | 186 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-35 | 18 | 186 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-35 | 18 | 186 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-35 | 18 | 186 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-35 | 18 | 186 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-35 | 18 | 186 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-35 | 18 | 186 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-35 | 18 | 186 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-35 | 18 | 186 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002131G0260 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096428 | 0.0 | FP096428.1 Phyllostachys edulis cDNA clone: bphyem102j18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151744.1 | 5e-90 | NAC domain-containing protein 83-like | ||||
TrEMBL | A0A3B6RII0 | 5e-89 | A0A3B6RII0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446XDS2 | 5e-89 | A0A446XDS2_TRITD; Uncharacterized protein | ||||
STRING | EMT32999 | 1e-86 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-46 | NAC domain containing protein 83 |