PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002122G0230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 168aa MW: 19848.9 Da PI: 10.6873 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.9e-16 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd +l +v+q+G++ W+++a++m+ + R +k+c +rw +yl PH01002122G0230 4 RQRWRPEEDAILRSYVRQYGPREWNLVAQRMNvaLDRDAKSCLERWKNYL 53 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 24.5 | 6.2e-08 | 70 | 98 | 17 | 47 |
HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqky 47 +++G++ Wk+Ia++++ gRt+k + +w + PH01002122G0230 70 AKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 98 69****.*********.*****999999766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.341 | 1 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-12 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.36E-20 | 4 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.62E-8 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 6 | 58 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.3E-15 | 7 | 67 | No hit | No description |
SMART | SM00717 | 0.006 | 58 | 101 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 12.697 | 58 | 103 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-9 | 59 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00146 | 64 | 99 | No hit | No description |
Pfam | PF00249 | 1.7E-5 | 69 | 95 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009615 | Biological Process | response to virus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010338 | Biological Process | leaf formation | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045088 | Biological Process | regulation of innate immune response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0000793 | Cellular Component | condensed chromosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MKERQRWRPE EDAILRSYVR QYGPREWNLV AQRMNVALDR DAKSCLERWK NYLRPGIKKG 60 SLSEEEQRLA KHGNKWKKIA AEVPGRTAKR LGKWWEVFKE KQQRELRDSR RPPPEPSPDE 120 RGRYEWLLEN FAEKLVKERQ VAPLLMAAPM LPPWMSSTPL IVPSFVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-14 | 7 | 95 | 7 | 97 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 6e-14 | 7 | 95 | 7 | 97 | C-Myb DNA-Binding Domain |
1msf_C | 6e-14 | 7 | 95 | 7 | 97 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002122G0230 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB443456 | 1e-138 | AB443456.1 Triticum aestivum WRS2 mRNA for Myb transcription factor, complete cds. | |||
GenBank | JF951902 | 1e-138 | JF951902.1 Triticum aestivum clone TaMYB18 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664658.1 | 2e-88 | PREDICTED: protein rough sheath 2 homolog | ||||
Swissprot | Q9S7B2 | 6e-86 | RS2_MAIZE; Protein rough sheath 2 | ||||
TrEMBL | A0A3B6KEE6 | 3e-85 | A0A3B6KEE6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453JX53 | 8e-86 | A0A453JX53_AEGTS; Uncharacterized protein | ||||
STRING | OB12G23330.1 | 5e-85 | (Oryza brachyantha) | ||||
STRING | Traes_5BS_E635B0A281.2 | 2e-85 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5190 | 36 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 4e-63 | MYB family protein |