PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002097G0110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | AP2 | ||||||||
Protein Properties | Length: 183aa MW: 20496.9 Da PI: 10.7017 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.7 | 1.5e-13 | 50 | 105 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++gr++A+++d ++ ng ++k+ + g +g +e Aa+a++ a++k++g PH01002097G0110 50 AYRGVTRHRWTGRFEAHLWDKNTrNGtQSKKGRQGAYGDEEAAARAYDLAALKYWG 105 69******************77768898888888********************98 PP | |||||||
2 | AP2 | 30 | 1.3e-09 | 148 | 182 | 1 | 38 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgt 38 s+y+GV +++++g+W+A+I + k+ +lg+++ PH01002097G0110 148 SKYRGVARHHRNGKWEARIGRmF-----GdKYLYLGTYDK 182 89****************99988.....56********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.09E-15 | 49 | 115 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.8E-20 | 50 | 119 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.1E-10 | 50 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-12 | 50 | 114 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.006 | 50 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-6 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-6 | 95 | 115 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-5 | 148 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-6 | 148 | 181 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 10.428 | 149 | 182 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-4 | 149 | 181 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MAKPREKGAG AGNSASNAAE ADAAAAAARL KPKRTRKSVP RECPSQRSSA YRGVTRHRWT 60 GRFEAHLWDK NTRNGTQSKK GRQGAYGDEE AAARAYDLAA LKYWGRDTVL NFPLSTYDEE 120 LKEMEGQSRE EYIGSLRRKS SGFSRGVSKY RGVARHHRNG KWEARIGRMF GDKYLYLGTY 180 DK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002097G0110 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106769 | 1e-142 | AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence. | |||
GenBank | HQ858820 | 1e-142 | HQ858820.1 Oryza sativa Japonica Group isolate UT1237 AP2-EREBP transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696557.1 | 1e-93 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 4e-78 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | J3MXL3 | 2e-92 | J3MXL3_ORYBR; Uncharacterized protein | ||||
STRING | OB09G17420.1 | 4e-93 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 9e-77 | AP2 family protein |
Publications ? help Back to Top | |||
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