PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002041G0310
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 310aa    MW: 32748.1 Da    PI: 7.2757
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002041G0310genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.94.6e-23201263163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv  L+a N+aL++el++lkk ++  + e+
  PH01002041G0310 201 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVTDLTAVNSALRSELDQLKKDCEDTEEEN 263
                      89*******************************************************888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.1E-17195261No hitNo description
SMARTSM003382.4E-21201265IPR004827Basic-leucine zipper domain
PfamPF001703.5E-21201263IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.76203266IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-11204257No hitNo description
CDDcd147023.10E-20206256No hitNo description
PROSITE patternPS000360208223IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MASFALNDDR PNGAPIDPST AAAPVAPQTH AEWAASMQAY YAATAGHPYA WPPTQGVPHM  60
AGETAASAVA VAEGKSKRKS TGSPSGEGAS AWYGLVLHLH GSSSAKRRKS SNANAEGEPS  120
QAATVQNAAA ESPFVAKGRR SASKLLISAP GRAALPNATP NLNIGMDLWS NSPSAAVPPG  180
QEDVNAGAPS QPNGALSQMD ERELKRERRK QSNRESARRS RLRKQQECEE LAQKVTDLTA  240
VNSALRSELD QLKKDCEDTE EENSQLMDEM VQSEGPSVLT TLSIQIDTSK PHHGSNGQLN  300
KHRNNDSKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217223RRSRLRK
2217224RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002041G0310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317833.11e-105DNA-binding protein EMBP-1 isoform X2
SwissprotP250325e-73EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A2T7BZD11e-105A0A2T7BZD1_9POAL; Uncharacterized protein
TrEMBLA0A368SCZ71e-105A0A368SCZ7_SETIT; Uncharacterized protein
STRINGPavir.J02462.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.12e-29basic region/leucine zipper transcription factor 16