PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002025G0150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ZF-HD | ||||||||
Protein Properties | Length: 160aa MW: 17394.1 Da PI: 11.8785 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.7 | 2.8e-33 | 34 | 89 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 +Y+eClkNhAaslGghavDGCgEfmps+ + +++++lkCaACgCHRnFHRr ++ PH01002025G0150 34 SMYRECLKNHAASLGGHAVDGCGEFMPSPAAYpADPTSLKCAACGCHRNFHRRLTD 89 68**************************99999********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.9E-28 | 35 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.12 | 36 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-21 | 36 | 84 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.1E-30 | 36 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MEAMDVKYKP AMFPNGAVKK VKPAAVAPAV VGESMYRECL KNHAASLGGH AVDGCGEFMP 60 SPAAYPADPT SLKCAACGCH RNFHRRLTDG SRRRLPRRRC QRRPCRRACS MASRTAGRRR 120 RRTGSRGSTA TSLTPTRTAR STTTRVFSSK KLTPRKDAA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 122 | RRRRRT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002025G0150 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001145929.2 | 6e-46 | uncharacterized protein LOC100279452 | ||||
Swissprot | Q6ER21 | 5e-41 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | B6TFI1 | 1e-44 | B6TFI1_MAIZE; ZF-HD homeobox protein | ||||
TrEMBL | B7ZY68 | 2e-44 | B7ZY68_MAIZE; Uncharacterized protein | ||||
TrEMBL | K0DG72 | 1e-44 | K0DG72_MAIZE; ZHD2 ZF-HD type transcription factor (Fragment) | ||||
STRING | GRMZM2G161315_P01 | 2e-45 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 1e-25 | zinc finger homeodomain 1 |