PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001857G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 770aa    MW: 83565.3 Da    PI: 5.5684
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001857G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.82.8e-21112167156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++++e++F+++++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k
  PH01001857G0080 112 KKRYHRHTAHQIQQMEAMFKECPHPDDKQRQRLSQELGLKPRQVKFWFQNRRTQMK 167
                      688999***********************************************998 PP
2START102.95.6e-332734872206
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...............dsgealrasgvvdmvlallveellddkeqWdetlakae 80 
                      la +aa+ l k+  a+ep+Wv+ +      ev+   e ++                 ++e  r+s+vv+m++ +lv  +ld + +W e ++   
  PH01001857G0080 273 LASTAADHLAKMCRANEPLWVRRR--GAASEVMAVDEHAQMfswpvdggkqgdvavARTEGTRDSAVVIMNSITLVDAFLDAN-KWMELFP--- 360
                      6789999*****************..6666666666666666777888889999999**************************.*******... PP

                      EEEEECTTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
            START  81 tlevissggalqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                          + ++ ++ +m+ae q+lsplvp R+ vf Ry+     +g+w ivd   d  q+   + svv ++++pSg++i++++ng+s+v+wveh+++
  PH01001857G0080 361 --SIVFKARTI-QMQAEVQFLSPLVPaREMVFFRYCVHnADEGSWSIVDFPADGFQDGLLQTSVVQCRRRPSGCIIQDMPNGYSRVVWVEHMEM 451
                      ..444455555.599***********************9999***************988*********************************9 PP

                      -SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 173 kgrlp..hwllrslvksglaegaktwvatlqrqcek 206
                       g     + +++  v  g+a+ga +wv  lqrqce+
  PH01001857G0080 452 VGEEKplQPVFKDYVAGGTAFGATRWVCLLQRQCER 487
                      8765449***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-2297163IPR009057Homeodomain-like
SuperFamilySSF466897.94E-2099170IPR009057Homeodomain-like
PROSITE profilePS5007117.54109169IPR001356Homeobox domain
SMARTSM003894.4E-20110173IPR001356Homeobox domain
PfamPF000468.5E-19112167IPR001356Homeobox domain
CDDcd000868.77E-20112170No hitNo description
PROSITE patternPS000270144167IPR017970Homeobox, conserved site
PROSITE profilePS5084835.311263490IPR002913START domain
SuperFamilySSF559613.98E-25266489No hitNo description
CDDcd088756.31E-93267486No hitNo description
SMARTSM002342.3E-12272487IPR002913START domain
PfamPF018525.6E-26273487IPR002913START domain
SuperFamilySSF559611.79E-14504747No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MAAASSSADA LFIPNPALAG FMSNSSSAMP FHHFPTTTTT TLIPKEEGLM GGIQMAKDEE  60
MEMELSGGSG SGHLDGLLSF ADVDDERDQK PQHSGHEQAE QSGSAAASNS KKKRYHRHTA  120
HQIQQMEAMF KECPHPDDKQ RQRLSQELGL KPRQVKFWFQ NRRTQMKAQQ DRADNVILRA  180
ENENLKSENF RLQAAIRNVV CPNCGHAAVL GEMTYEEHQL RTENARLKDE QSVMGCADLI  240
PPVVPQQIAD HGVAYVGAMA PVQEQDKQLV LDLASTAADH LAKMCRANEP LWVRRRGAAS  300
EVMAVDEHAQ MFSWPVDGGK QGDVAVARTE GTRDSAVVIM NSITLVDAFL DANKWMELFP  360
SIVFKARTIQ MQAEVQFLSP LVPAREMVFF RYCVHNADEG SWSIVDFPAD GFQDGLLQTS  420
VVQCRRRPSG CIIQDMPNGY SRVVWVEHME MVGEEKPLQP VFKDYVAGGT AFGATRWVCL  480
LQRQCERLAS ELARNIADLG VIRTPEARTN MMKLSQRMIT AFCANISSSG SQSWTALSDS  540
TEDTIRVTTR KNTEPGQPSG VILTAVSTSW LPFVHQQVFE LLADEQQRCQ LEILSNGGSL  600
HEVAHIANGS HPRNCISLLR INAASNSSQN VELLLQESSA HPDGGSLVVF ATVDVDAIQV  660
TMSGEDPSYI PLLPLGFAIF PANNPSPAAT SAKTGDGEST PGNADEPATG CLLTVGMQVL  720
ASAVPSAKLN LSSVTAINSH VCNAIHQITA ALKGAGASRG EPASAVSDQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001857G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1016460.0AB101646.1 Oryza sativa Japonica Group Roc3 mRNA for GL2-type homeodomain protein, complete cds.
GenBankAK0719390.0AK071939.1 Oryza sativa Japonica Group cDNA clone:J013087I01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798256.10.0homeobox-leucine zipper protein ROC3
RefseqXP_025798257.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A3L6THL50.0A0A3L6THL5_PANMI; Homeobox-leucine zipper protein ROC3
STRINGOPUNC10G17890.10.0(Oryza punctata)
STRINGOPUNC10G17920.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7