PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001778G0330
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 429aa    MW: 48982.6 Da    PI: 6.7604
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001778G0330genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.74.9e-26108204186
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                      +Wt+++v++Li+a ++++e+ +++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++ +++d
  PH01001778G0330 108 KWTDSMVKLLITAASYTGEDHGADLgggrrnftmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGiACNVVENPVLLD 201
                      7*****************99998644455667777**********************************************89*********** PP

         trihelix  84 qle 86 
                      +++
  PH01001778G0330 202 RMD 204
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-19106230No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MQGAPYGGLD LHGNSMQMHA PNSGKQVFNH SQMPGNFTMP MNQVTGPDNF SGFQFGEHGK  60
TDHHHLHHHH SHHSKNSMSD DEEHDMTEDA TDTQSGKGKK SSAWHRMKWT DSMVKLLITA  120
ASYTGEDHGA DLGGGRRNFT MMQKKGKWKA ISKVMGERGC HVSPQQCEDK FNDLNKRYKR  180
LTDILGRGIA CNVVENPVLL DRMDNLSDKM KDDARKILNS KHLFYEEMCS YHNNNRVNLP  240
EDPALQHSLQ LALRCKEEHD PRRDASGDAE EDDHSVDSDY EENDEEHQAV HTDMRDPPVN  300
KRMRHAVDHG DVGFVTSSWN DGSGRSDPHG ITLDVNKVFP DGTNLALVQK DLASQTAEVQ  360
KHHLQIEAKA LELTKQRLKW ERFRKKKDRE MERMTLENEQ MMLENKRLEL ELRHKELELK  420
LKGNGNHV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374385KQRLKWERFRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001778G0330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187300.10.0stress response protein NST1-like
TrEMBLA0A411JJN70.0A0A411JJN7_WHEAT; SAB
STRINGTraes_1BL_5C07BE2D0.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-98sequence-specific DNA binding transcription factors