PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001762G0240
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 482aa    MW: 52046.3 Da    PI: 8.6312
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001762G0240genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.72.8e-13256306155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ ++ g
  PH01001762G0240 256 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFSG 306
                      89********.7******...5...334336**********99**********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-18119227IPR001471AP2/ERF domain
PROSITE profilePS5103214.526119221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-13119141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-13185221IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-8187222IPR016177DNA-binding domain
PfamPF008477.9E-9256304IPR001471AP2/ERF domain
CDDcd000181.91E-25256316No hitNo description
SuperFamilySSF541719.15E-17256315IPR016177DNA-binding domain
SMARTSM003805.6E-32257320IPR001471AP2/ERF domain
PROSITE profilePS5103215.962257314IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-16257314IPR001471AP2/ERF domain
PRINTSPR003673.7E-6258269IPR001471AP2/ERF domain
PRINTSPR003673.7E-6296316IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVLDLNVESP GRSGTSSSSA PYAGGGGGAF RFDLLGGSPD EEGCSPPVIT RQLFPSPSPS  60
SGADAAAAAA AAAVSDESPP PAGAAWQRSA ADLGVAQRVV VGGAGGKKSR RGPRSRSSQY  120
RGVTFYRRTG RWESHIWLVH YFARLNHACL HLLRTFCLRR PFWAGIAGSR CTWVSSNSTF  180
LAQSGAQVLI LGGFDTAHAA ARAYDRAAIK FRGLNADINF NLNDYEEDLK QMRNWTKEEF  240
VHILRRQSTG FARGSSKYRG VTLHKCGRWE ARMGQLLGKK YIYLGLFDSE IEAARAYDRA  300
AIRFSGREAV TNFDATSYDG GALPETENEA VVDGDIIDLN LRISQPNVHD LKSDGMLTGF  360
QLNCDSPEAS SSIVSQPISP QWPVPPQGTS IPPQYPHLYA SPCPGFFVNL REVPMEKRPE  420
LGPQSFPSWS WQMQGSPLPL LPTAASSGFS TATGADTPRM VSSSSQPHPF TGHQLYFPPT  480
A*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001762G0240
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8319750.0CT831975.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E13, full insert sequence.
GenBankDQ3746630.0DQ374663.1 Oryza sativa (japonica cultivar-group) supernumerary bract mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647891.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ8H4430.0AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A0E0LIR20.0A0A0E0LIR2_ORYPU; Uncharacterized protein
STRINGOPUNC07G07690.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-72related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]