PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001750G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 365aa    MW: 38029.6 Da    PI: 6.0643
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001750G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1781.1e-24247309163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkrerrkq+NRe+ArrsR+RK++e+eeL +kv+eL++eN+aL+ el++lkk ++ +++e+
  PH01001750G0080 247 ERELKRERRKQSNRESARRSRLRKQQECEELGRKVAELTTENDALRTELDQLKKACEDMEAEN 309
                      89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165961.8E-7115224No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-17243306No hitNo description
PfamPF001709.3E-22247309IPR004827Basic-leucine zipper domain
SMARTSM003385.2E-22247311IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.346249312IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.31E-12250305No hitNo description
CDDcd147021.62E-22252302No hitNo description
PROSITE patternPS000360254269IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MASSSDEQPK PPEPPAVAVA AQPHAEWAAS LQAYYAAAGH PYAWPAQHLM AAAAAGAPYG  60
TPVPFPVYHP GAAVAYYAHA SMAAGVPYPT AEAVAAAAAE GKGKGKSGGA SPEKGSSGAP  120
SGDDASGSGD SGSEESSETR DDDTDHKDSS APKKRKSGNT SAEGEPSQTA VVPYAAVESP  180
YQVKGRSASK LPVSAPGRAA LPNATPNLNI GIDLWSASPA LAVPAGQGEA NPGLALARRD  240
GVSQLDEREL KRERRKQSNR ESARRSRLRK QQECEELGRK VAELTTENDA LRTELDQLKK  300
ACEDMEAENT RLMSQGPTVT TTLGMSLDSS KAQQHDDEGQ LHKNTNNNSN GNYIGGSHKP  360
EANSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263269RRSRLRK
2263270RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001750G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0930860.0FP093086.1 Phyllostachys edulis cDNA clone: bphyem203l01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159000.10.0DNA-binding protein EMBP-1-like isoform X2
SwissprotP250322e-62EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A3B6AY420.0A0A3B6AY42_WHEAT; Uncharacterized protein
TrEMBLA0A446KY930.0A0A446KY93_TRITD; Uncharacterized protein
STRINGTraes_2BL_245DDBC7B.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-22basic region/leucine zipper transcription factor 16